Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5185 and GFF5186 overlap by 4 nucleotides GFF5186 and GFF5187 are separated by 27 nucleotides
GFF5185 - FIG00732904: hypothetical protein, at 38,479 to 43,239
GFF5185
GFF5186 - hypothetical protein, at 43,236 to 44,177
GFF5186
GFF5187 - Aldose 1-epimerase (EC 5.1.3.3), at 44,205 to 45,284
GFF5187
Position (kb) 43
44
45 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 42.244 kb on + strand, within GFF5185 at 42.244 kb on + strand, within GFF5185 at 42.245 kb on - strand, within GFF5185 at 42.245 kb on - strand, within GFF5185 at 42.245 kb on - strand, within GFF5185 at 42.245 kb on - strand, within GFF5185 at 42.445 kb on + strand, within GFF5185 at 42.446 kb on - strand, within GFF5185 at 42.667 kb on + strand, within GFF5185 at 43.138 kb on + strand at 43.235 kb on + strand at 43.235 kb on + strand at 43.235 kb on + strand at 43.235 kb on + strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.419 kb on + strand, within GFF5186 at 43.419 kb on + strand, within GFF5186 at 43.420 kb on - strand, within GFF5186 at 43.650 kb on + strand, within GFF5186 at 43.650 kb on + strand, within GFF5186 at 43.651 kb on - strand, within GFF5186 at 43.651 kb on - strand, within GFF5186 at 43.651 kb on - strand, within GFF5186 at 43.929 kb on + strand, within GFF5186 at 43.929 kb on + strand, within GFF5186 at 43.930 kb on - strand, within GFF5186 at 43.930 kb on - strand, within GFF5186 at 44.106 kb on + strand at 44.200 kb on + strand at 44.268 kb on + strand at 44.400 kb on + strand, within GFF5187 at 44.401 kb on - strand, within GFF5187 at 44.619 kb on + strand, within GFF5187 at 44.619 kb on + strand, within GFF5187 at 44.619 kb on + strand, within GFF5187 at 44.676 kb on + strand, within GFF5187 at 44.716 kb on - strand, within GFF5187 at 44.766 kb on + strand, within GFF5187 at 44.766 kb on + strand, within GFF5187 at 44.767 kb on - strand, within GFF5187 at 44.767 kb on - strand, within GFF5187 at 44.835 kb on + strand, within GFF5187 at 44.913 kb on - strand, within GFF5187 at 44.970 kb on + strand, within GFF5187 at 45.097 kb on - strand, within GFF5187
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 42,244 + GFF5185 0.79 -1.7 42,244 + GFF5185 0.79 +0.1 42,245 - GFF5185 0.79 +0.7 42,245 - GFF5185 0.79 -1.1 42,245 - GFF5185 0.79 +0.1 42,245 - GFF5185 0.79 +1.3 42,445 + GFF5185 0.83 -0.5 42,446 - GFF5185 0.83 -2.0 42,667 + GFF5185 0.88 -1.4 43,138 + +0.1 43,235 + +0.4 43,235 + -0.3 43,235 + +0.5 43,235 + +1.5 43,236 - -0.3 43,236 - -2.2 43,236 - -0.3 43,236 - +0.9 43,236 - -0.4 43,236 - +0.3 43,236 - -1.4 43,419 + GFF5186 0.19 +0.5 43,419 + GFF5186 0.19 +2.6 43,420 - GFF5186 0.20 +0.8 43,650 + GFF5186 0.44 -1.7 43,650 + GFF5186 0.44 -0.1 43,651 - GFF5186 0.44 -1.4 43,651 - GFF5186 0.44 +0.6 43,651 - GFF5186 0.44 -0.3 43,929 + GFF5186 0.74 +0.6 43,929 + GFF5186 0.74 +1.1 43,930 - GFF5186 0.74 -0.8 43,930 - GFF5186 0.74 -3.8 44,106 + -1.4 44,200 + -1.2 44,268 + +2.6 44,400 + GFF5187 0.18 -1.7 44,401 - GFF5187 0.18 -0.1 44,619 + GFF5187 0.38 +1.3 44,619 + GFF5187 0.38 -0.6 44,619 + GFF5187 0.38 -0.6 44,676 + GFF5187 0.44 +1.0 44,716 - GFF5187 0.47 -0.1 44,766 + GFF5187 0.52 -1.4 44,766 + GFF5187 0.52 -0.2 44,767 - GFF5187 0.52 +2.2 44,767 - GFF5187 0.52 +1.0 44,835 + GFF5187 0.58 -2.3 44,913 - GFF5187 0.66 -2.3 44,970 + GFF5187 0.71 -2.1 45,097 - GFF5187 0.83 +0.5
Or see this region's nucleotide sequence