Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5104 and GFF5105 are separated by 95 nucleotides GFF5105 and GFF5106 are separated by 15 nucleotides
GFF5104 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 205,465 to 206,454
GFF5104
GFF5105 - Transcriptional regulator, MerR family, at 206,550 to 207,563
GFF5105
GFF5106 - Permease of the drug/metabolite transporter (DMT) superfamily, at 207,579 to 208,523
GFF5106
Position (kb) 206
207
208 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 206.167 kb on + strand, within GFF5104 at 206.168 kb on - strand, within GFF5104 at 206.168 kb on - strand, within GFF5104 at 206.449 kb on + strand at 206.449 kb on + strand at 206.449 kb on + strand at 206.450 kb on - strand at 206.450 kb on - strand at 206.450 kb on - strand at 206.450 kb on - strand at 206.450 kb on - strand at 206.631 kb on + strand at 206.631 kb on + strand at 206.632 kb on - strand at 206.632 kb on - strand at 206.632 kb on - strand at 206.685 kb on + strand, within GFF5105 at 206.685 kb on + strand, within GFF5105 at 206.686 kb on - strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.025 kb on - strand, within GFF5105 at 207.025 kb on - strand, within GFF5105 at 207.025 kb on - strand, within GFF5105 at 207.025 kb on - strand, within GFF5105 at 207.471 kb on + strand at 207.471 kb on + strand at 207.472 kb on - strand at 207.472 kb on - strand at 207.567 kb on - strand at 207.679 kb on + strand, within GFF5106 at 207.679 kb on + strand, within GFF5106 at 207.679 kb on + strand, within GFF5106 at 207.680 kb on - strand, within GFF5106 at 207.680 kb on - strand, within GFF5106 at 207.805 kb on + strand, within GFF5106 at 207.805 kb on + strand, within GFF5106 at 207.806 kb on - strand, within GFF5106 at 207.806 kb on - strand, within GFF5106 at 207.806 kb on - strand, within GFF5106 at 207.806 kb on - strand, within GFF5106 at 207.806 kb on - strand, within GFF5106 at 208.402 kb on + strand, within GFF5106 at 208.402 kb on + strand, within GFF5106 at 208.402 kb on + strand, within GFF5106 at 208.403 kb on - strand, within GFF5106 at 208.403 kb on - strand, within GFF5106 at 208.403 kb on - strand, within GFF5106 at 208.523 kb on + strand at 208.524 kb on - strand at 208.524 kb on - strand at 208.524 kb on - strand at 208.524 kb on - strand at 208.524 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 206,167 + GFF5104 0.71 +0.5 206,168 - GFF5104 0.71 -1.6 206,168 - GFF5104 0.71 -0.1 206,449 + +1.0 206,449 + -0.0 206,449 + -0.7 206,450 - -0.9 206,450 - +0.4 206,450 - +0.7 206,450 - -2.6 206,450 - -0.3 206,631 + -0.6 206,631 + -0.4 206,632 - -1.8 206,632 - -0.9 206,632 - +2.1 206,685 + GFF5105 0.13 +0.5 206,685 + GFF5105 0.13 -1.4 206,686 - GFF5105 0.13 -2.1 207,024 + GFF5105 0.47 -1.6 207,024 + GFF5105 0.47 +3.0 207,024 + GFF5105 0.47 +0.2 207,024 + GFF5105 0.47 +4.8 207,024 + GFF5105 0.47 +0.7 207,024 + GFF5105 0.47 +0.8 207,024 + GFF5105 0.47 -1.6 207,024 + GFF5105 0.47 +2.3 207,024 + GFF5105 0.47 +1.6 207,024 + GFF5105 0.47 +3.5 207,025 - GFF5105 0.47 +0.9 207,025 - GFF5105 0.47 +0.9 207,025 - GFF5105 0.47 -2.1 207,025 - GFF5105 0.47 +2.1 207,471 + -2.4 207,471 + +1.0 207,472 - -0.3 207,472 - -0.3 207,567 - +4.1 207,679 + GFF5106 0.11 -0.4 207,679 + GFF5106 0.11 -1.9 207,679 + GFF5106 0.11 -2.3 207,680 - GFF5106 0.11 -1.2 207,680 - GFF5106 0.11 -1.6 207,805 + GFF5106 0.24 -2.1 207,805 + GFF5106 0.24 +0.8 207,806 - GFF5106 0.24 +2.6 207,806 - GFF5106 0.24 +3.2 207,806 - GFF5106 0.24 -0.3 207,806 - GFF5106 0.24 -0.1 207,806 - GFF5106 0.24 +0.2 208,402 + GFF5106 0.87 -1.3 208,402 + GFF5106 0.87 -2.1 208,402 + GFF5106 0.87 -1.6 208,403 - GFF5106 0.87 -0.4 208,403 - GFF5106 0.87 -0.0 208,403 - GFF5106 0.87 -2.2 208,523 + +0.8 208,524 - +0.3 208,524 - -0.1 208,524 - -1.1 208,524 - +0.3 208,524 - -1.2
Or see this region's nucleotide sequence