Strain Fitness in Variovorax sp. SCN45 around GFF5083

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5082 and GFF5083 are separated by 192 nucleotidesGFF5083 and GFF5084 are separated by 7 nucleotidesGFF5084 and GFF5085 are separated by 184 nucleotides GFF5082 - Uncharacterized MFS-type transporter, at 185,380 to 186,693 GFF5082 GFF5083 - Transcriptional regulator, LysR family, at 186,886 to 187,833 GFF5083 GFF5084 - FIG00933367: hypothetical protein, at 187,841 to 188,278 GFF5084 GFF5085 - hypothetical protein, at 188,463 to 188,918 GFF5085 Position (kb) 186 187 188Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 185.897 kb on + strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.120 kb on - strand, within GFF5082at 186.324 kb on - strand, within GFF5082at 186.324 kb on - strand, within GFF5082at 186.324 kb on - strand, within GFF5082at 186.324 kb on - strand, within GFF5082at 186.413 kb on + strand, within GFF5082at 186.413 kb on + strand, within GFF5082at 186.548 kb on + strand, within GFF5082at 186.548 kb on + strand, within GFF5082at 186.549 kb on - strand, within GFF5082at 186.549 kb on - strand, within GFF5082at 186.549 kb on - strand, within GFF5082at 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.751 kb on + strandat 186.751 kb on + strandat 186.751 kb on + strandat 186.751 kb on + strandat 186.752 kb on - strandat 186.752 kb on - strandat 187.830 kb on + strandat 187.831 kb on + strandat 187.831 kb on + strandat 187.831 kb on + strandat 187.831 kb on + strandat 187.831 kb on + strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.941 kb on + strand, within GFF5084at 187.942 kb on - strand, within GFF5084at 187.942 kb on - strand, within GFF5084at 187.942 kb on - strand, within GFF5084at 187.942 kb on - strand, within GFF5084at 187.968 kb on + strand, within GFF5084at 187.968 kb on + strand, within GFF5084at 187.969 kb on - strand, within GFF5084at 187.969 kb on - strand, within GFF5084at 188.091 kb on + strand, within GFF5084at 188.091 kb on + strand, within GFF5084at 188.092 kb on - strand, within GFF5084at 188.092 kb on - strand, within GFF5084at 188.092 kb on - strand, within GFF5084at 188.343 kb on + strandat 188.378 kb on + strandat 188.378 kb on + strandat 188.462 kb on + strandat 188.462 kb on + strandat 188.462 kb on + strandat 188.462 kb on + strandat 188.462 kb on + strandat 188.463 kb on - strandat 188.541 kb on + strand, within GFF5085at 188.541 kb on + strand, within GFF5085at 188.541 kb on + strand, within GFF5085at 188.541 kb on + strand, within GFF5085at 188.541 kb on + strand, within GFF5085at 188.542 kb on - strand, within GFF5085at 188.542 kb on - strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.640 kb on + strand, within GFF5085at 188.641 kb on - strand, within GFF5085at 188.667 kb on + strand, within GFF5085

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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185,897 + GFF5082 0.39 -2.0
185,898 - GFF5082 0.39 -2.1
185,898 - GFF5082 0.39 -0.3
185,898 - GFF5082 0.39 -0.6
185,898 - GFF5082 0.39 -1.3
185,898 - GFF5082 0.39 -0.6
185,898 - GFF5082 0.39 -0.5
186,028 + GFF5082 0.49 -0.3
186,028 + GFF5082 0.49 -1.5
186,028 + GFF5082 0.49 -1.6
186,028 + GFF5082 0.49 +0.1
186,028 + GFF5082 0.49 -1.6
186,028 + GFF5082 0.49 +0.5
186,028 + GFF5082 0.49 -1.4
186,028 + GFF5082 0.49 -0.2
186,029 - GFF5082 0.49 -0.7
186,029 - GFF5082 0.49 -1.3
186,029 - GFF5082 0.49 +1.2
186,029 - GFF5082 0.49 -0.9
186,029 - GFF5082 0.49 -1.2
186,029 - GFF5082 0.49 +0.7
186,029 - GFF5082 0.49 +1.2
186,029 - GFF5082 0.49 -2.2
186,029 - GFF5082 0.49 -1.6
186,029 - GFF5082 0.49 -2.5
186,029 - GFF5082 0.49 -0.2
186,029 - GFF5082 0.49 +0.7
186,029 - GFF5082 0.49 +0.5
186,029 - GFF5082 0.49 -0.5
186,029 - GFF5082 0.49 -0.5
186,032 + GFF5082 0.50 +2.3
186,032 + GFF5082 0.50 +1.0
186,032 + GFF5082 0.50 +1.4
186,032 + GFF5082 0.50 -0.6
186,032 + GFF5082 0.50 -3.2
186,032 + GFF5082 0.50 -0.4
186,032 + GFF5082 0.50 -0.5
186,032 + GFF5082 0.50 -0.1
186,032 + GFF5082 0.50 -2.0
186,032 + GFF5082 0.50 -1.8
186,032 + GFF5082 0.50 -1.0
186,032 + GFF5082 0.50 +0.2
186,032 + GFF5082 0.50 +0.1
186,033 - GFF5082 0.50 +0.3
186,033 - GFF5082 0.50 -0.7
186,033 - GFF5082 0.50 -0.3
186,033 - GFF5082 0.50 -2.0
186,033 - GFF5082 0.50 +0.1
186,033 - GFF5082 0.50 -2.8
186,033 - GFF5082 0.50 +0.6
186,120 - GFF5082 0.56 +0.6
186,324 - GFF5082 0.72 +1.3
186,324 - GFF5082 0.72 +0.4
186,324 - GFF5082 0.72 +1.5
186,324 - GFF5082 0.72 -0.4
186,413 + GFF5082 0.79 -0.6
186,413 + GFF5082 0.79 -0.9
186,548 + GFF5082 0.89 -2.2
186,548 + GFF5082 0.89 -0.5
186,549 - GFF5082 0.89 +0.9
186,549 - GFF5082 0.89 -0.1
186,549 - GFF5082 0.89 +0.5
186,563 + -2.2
186,563 + -1.5
186,563 + +1.2
186,563 + +1.9
186,563 + +1.5
186,563 + -0.4
186,563 + +0.2
186,563 + -0.6
186,563 + +0.9
186,564 - -0.4
186,564 - -0.3
186,564 - +0.9
186,564 - +0.3
186,564 - -0.6
186,564 - -2.9
186,564 - +0.6
186,695 + -0.8
186,695 + +0.9
186,695 + -0.1
186,695 + -2.7
186,695 + -0.4
186,695 + -0.3
186,695 + -0.3
186,695 + -1.6
186,695 + -1.6
186,695 + +2.5
186,696 - +0.9
186,696 - -0.7
186,696 - +1.7
186,696 - -3.1
186,696 - -1.5
186,696 - -0.8
186,696 - -1.1
186,696 - +0.5
186,751 + +0.7
186,751 + +1.2
186,751 + +0.4
186,751 + -2.1
186,752 - +1.5
186,752 - -0.1
187,830 + -3.0
187,831 + -1.4
187,831 + +1.1
187,831 + -1.3
187,831 + -0.1
187,831 + +0.9
187,832 - -1.0
187,832 - +0.9
187,832 - +1.0
187,832 - +1.0
187,832 - +1.1
187,832 - +0.2
187,832 - -0.9
187,832 - -0.8
187,832 - +0.3
187,941 + GFF5084 0.23 -2.8
187,942 - GFF5084 0.23 -2.8
187,942 - GFF5084 0.23 -0.6
187,942 - GFF5084 0.23 -3.3
187,942 - GFF5084 0.23 +1.0
187,968 + GFF5084 0.29 +0.2
187,968 + GFF5084 0.29 -1.1
187,969 - GFF5084 0.29 -3.1
187,969 - GFF5084 0.29 -2.8
188,091 + GFF5084 0.57 -1.6
188,091 + GFF5084 0.57 +0.9
188,092 - GFF5084 0.57 -0.2
188,092 - GFF5084 0.57 -1.4
188,092 - GFF5084 0.57 -1.1
188,343 + +1.0
188,378 + +0.8
188,378 + -1.3
188,462 + -0.6
188,462 + -1.2
188,462 + -0.8
188,462 + +0.9
188,462 + +0.4
188,463 - +0.9
188,541 + GFF5085 0.17 -1.5
188,541 + GFF5085 0.17 +1.2
188,541 + GFF5085 0.17 +2.8
188,541 + GFF5085 0.17 +1.1
188,541 + GFF5085 0.17 +0.5
188,542 - GFF5085 0.17 +0.6
188,542 - GFF5085 0.17 -0.9
188,592 + GFF5085 0.28 +0.2
188,592 + GFF5085 0.28 -3.8
188,592 + GFF5085 0.28 -0.9
188,592 + GFF5085 0.28 -0.1
188,592 + GFF5085 0.28 -0.8
188,592 + GFF5085 0.28 +1.0
188,592 + GFF5085 0.28 -1.9
188,592 + GFF5085 0.28 -0.6
188,592 + GFF5085 0.28 -3.6
188,592 + GFF5085 0.28 -0.2
188,592 + GFF5085 0.28 -1.1
188,593 - GFF5085 0.29 +0.2
188,593 - GFF5085 0.29 -0.7
188,593 - GFF5085 0.29 -2.1
188,593 - GFF5085 0.29 -1.6
188,593 - GFF5085 0.29 -2.6
188,593 - GFF5085 0.29 +1.2
188,640 + GFF5085 0.39 -1.2
188,641 - GFF5085 0.39 -0.9
188,667 + GFF5085 0.45 -2.0

Or see this region's nucleotide sequence