Strain Fitness in Variovorax sp. SCN45 around GFF5039

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
138,860	+		GFF5038	0.26	+0.6
139,025	+		GFF5038	0.39	-0.1
139,025	+		GFF5038	0.39	+0.8
139,025	+		GFF5038	0.39	+1.1
139,025	+		GFF5038	0.39	-0.5
139,026	-		GFF5038	0.39	+1.9
139,268	+		GFF5038	0.59	-0.8
139,268	+		GFF5038	0.59	+0.8
139,583	+		GFF5038	0.85	+0.3
139,583	+		GFF5038	0.85	+0.6
139,583	+		GFF5038	0.85	+0.9
139,584	-		GFF5038	0.85	+0.6
139,754	+				+0.4
139,754	+				+0.5
139,754	+				-0.9
139,754	+				-0.3
139,754	+				+0.2
139,755	-				-1.3
139,755	-				+0.5
139,755	-				+0.8
139,755	-				-1.5
139,755	-				-1.5
139,755	-				-1.4
139,755	-				-0.2
139,813	+		GFF5039	0.11	+1.3
139,813	+		GFF5039	0.11	+2.3
139,813	+		GFF5039	0.11	+2.9
139,813	+		GFF5039	0.11	-0.2
139,813	+		GFF5039	0.11	-0.9
139,968	+		GFF5039	0.53	+0.2
139,968	+		GFF5039	0.53	-0.8
140,263	-				-0.9
140,263	-				-4.1
140,379	+				-2.7
140,380	-				-0.1
140,477	+				-0.5
140,477	+				-1.2
140,477	+				+0.5
140,477	+				-1.4
140,478	-				-0.6
140,478	-				-0.0
140,532	+				+0.8
140,532	+				-1.3
140,532	+				+0.4
140,533	-				-1.4
140,735	+		GFF5040	0.16	+0.0
140,735	+		GFF5040	0.16	-2.8
140,736	-		GFF5040	0.16	+2.1
140,768	+		GFF5040	0.18	+0.9
140,769	-		GFF5040	0.18	-1.4
140,855	+		GFF5040	0.23	+0.2
140,855	+		GFF5040	0.23	+2.2
140,855	+		GFF5040	0.23	+0.5
140,855	+		GFF5040	0.23	-2.8
140,855	+		GFF5040	0.23	-1.4
140,855	+		GFF5040	0.23	-0.3
140,855	+		GFF5040	0.23	+2.5
140,855	+		GFF5040	0.23	-0.8
140,856	-		GFF5040	0.23	-2.8
140,856	-		GFF5040	0.23	+0.0
140,856	-		GFF5040	0.23	-2.3
141,011	+		GFF5040	0.33	+0.5
141,011	+		GFF5040	0.33	-0.1
141,011	+		GFF5040	0.33	-0.5
141,011	+		GFF5040	0.33	-2.2
141,011	+		GFF5040	0.33	-0.9
141,012	-		GFF5040	0.33	-1.3
141,012	-		GFF5040	0.33	-0.3
141,012	-		GFF5040	0.33	+0.6
141,012	-		GFF5040	0.33	+0.3
141,012	-		GFF5040	0.33	+0.8
141,012	-		GFF5040	0.33	+0.3
141,012	-		GFF5040	0.33	-0.4
141,107	+		GFF5040	0.39	+0.2
141,107	+		GFF5040	0.39	-1.6
141,107	+		GFF5040	0.39	+1.9
141,107	+		GFF5040	0.39	-0.8
141,108	-		GFF5040	0.39	-2.4
141,108	-		GFF5040	0.39	-1.4
141,108	-		GFF5040	0.39	+2.5
141,108	-		GFF5040	0.39	-0.5
141,108	-		GFF5040	0.39	-2.0
141,108	-		GFF5040	0.39	+1.8
141,108	-		GFF5040	0.39	+0.6