Strain Fitness in Variovorax sp. SCN45 around GFF5009

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
109,225	+		GFF5008	0.51	+0.9
109,225	+		GFF5008	0.51	-1.5
109,225	+		GFF5008	0.51	-2.1
109,225	+		GFF5008	0.51	+0.2
109,225	+		GFF5008	0.51	+0.3
109,225	+		GFF5008	0.51	-2.0
109,225	+		GFF5008	0.51	+0.2
109,225	+		GFF5008	0.51	+1.5
109,225	+		GFF5008	0.51	+2.1
109,225	+		GFF5008	0.51	-1.6
109,225	+		GFF5008	0.51	+1.0
109,225	+		GFF5008	0.51	+3.5
109,225	+		GFF5008	0.51	-1.1
109,225	+		GFF5008	0.51	-0.8
109,225	+		GFF5008	0.51	-0.5
109,226	-		GFF5008	0.51	+0.9
109,226	-		GFF5008	0.51	+0.9
109,226	-		GFF5008	0.51	+2.9
109,226	-		GFF5008	0.51	-0.1
109,226	-		GFF5008	0.51	-0.7
109,226	-		GFF5008	0.51	+0.0
109,226	-		GFF5008	0.51	-2.4
109,226	-		GFF5008	0.51	-0.8
109,226	-		GFF5008	0.51	+0.9
109,226	-		GFF5008	0.51	+0.1
109,226	-		GFF5008	0.51	-2.8
109,226	-		GFF5008	0.51	-0.8
109,226	-		GFF5008	0.51	-0.8
109,226	-		GFF5008	0.51	-3.4
109,442	-		GFF5008	0.64	+1.1
109,442	-		GFF5008	0.64	+0.2
109,603	+		GFF5008	0.73	+0.5
109,603	+		GFF5008	0.73	-0.1
109,604	-		GFF5008	0.73	-0.8
109,604	-		GFF5008	0.73	-1.4
109,604	-		GFF5008	0.73	+0.2
109,604	-		GFF5008	0.73	-2.1
109,647	+		GFF5008	0.76	-1.4
109,647	+		GFF5008	0.76	+0.4
109,647	+		GFF5008	0.76	+1.1
109,648	-		GFF5008	0.76	+0.5
109,648	-		GFF5008	0.76	-2.3
109,648	-		GFF5008	0.76	+1.5
109,648	-		GFF5008	0.76	-1.3
109,726	+		GFF5008	0.80	-2.0
109,726	+		GFF5008	0.80	+1.2
109,726	+		GFF5008	0.80	+0.8
109,726	+		GFF5008	0.80	-0.0
109,726	+		GFF5008	0.80	+0.8
109,726	+		GFF5008	0.80	-1.6
109,726	+		GFF5008	0.80	+1.8
109,726	+		GFF5008	0.80	-0.3
109,726	+		GFF5008	0.80	+1.5
109,726	+		GFF5008	0.80	-0.9
109,726	+		GFF5008	0.80	+1.0
109,727	-		GFF5008	0.80	+1.1
109,727	-		GFF5008	0.80	+2.4
109,727	-		GFF5008	0.80	-1.2
109,727	-		GFF5008	0.80	-0.8
109,727	-		GFF5008	0.80	+0.2
109,727	-		GFF5008	0.80	-0.1
109,727	-		GFF5008	0.80	-2.2
109,727	-		GFF5008	0.80	-1.1
109,727	-		GFF5008	0.80	-1.1
109,727	-		GFF5008	0.80	-0.8
109,727	-		GFF5008	0.80	-0.1
109,727	-		GFF5008	0.80	-0.5
109,727	-		GFF5008	0.80	-1.0
109,969	+				+0.5
109,969	+				-0.3
109,969	+				+1.3
109,969	+				-3.4
109,969	+				+0.2
109,970	-				+0.5
109,970	-				-2.2
109,970	-				-0.8
109,970	-				+0.8
109,970	-				-1.6
109,970	-				+0.3
109,970	-				-0.5
109,970	-				+1.4
109,970	-				-0.3
109,970	-				-0.1
110,011	+				-2.3
110,011	+				-1.9
110,011	+				+0.9
110,011	+				+0.1
110,011	+				-0.6
110,011	+				+0.5
110,011	+				-0.4
110,011	+				-0.8
110,011	+				-0.5
110,011	+				-0.3
110,011	+				+1.3
110,011	+				-2.1
110,011	+				-1.4
110,011	+				-2.1
110,011	+				-0.7
110,011	-				+0.4
110,012	-				-0.6
110,012	-				+0.3
110,012	-				-0.1
110,012	-				+0.9
110,012	-				-1.2
110,012	-				-0.4
110,012	-				-0.2
110,012	-				-2.5
110,012	-				-2.7
110,012	-				+0.3
110,012	-				-0.8
110,012	-				+0.1
110,012	-				-0.0
110,012	-				+0.0
110,012	-				-1.4
110,012	-				-2.7
110,012	-				-1.6
110,012	-				+0.5
110,012	-				-3.3
110,012	-				+0.1
110,012	-				-0.2
110,040	-				-0.5
110,052	+				-1.7
110,062	+				-0.9
110,062	+				-0.6
110,063	-				-2.0
110,063	-				+0.8
110,066	+				+0.6
110,067	-				-1.2
110,078	+				+0.9
110,091	+				-0.2
110,110	+				+0.2
110,110	+				+0.6
110,111	-				-1.4
110,215	+				-1.2
110,216	-				+0.4
110,238	+				+0.5
110,238	+				+4.2
110,238	+				+0.2
110,238	+				-0.3
110,238	+				+0.4
110,238	+				-1.7
110,239	-				-1.5
110,239	-				+1.1
110,239	-				-1.1
110,239	-				+1.5
110,239	-				+0.9
110,239	-				+1.0
110,239	-				+1.5
110,422	-		GFF5009	0.29	-2.1
110,445	+		GFF5009	0.32	-1.1
110,445	+		GFF5009	0.32	-1.5
110,446	-		GFF5009	0.32	-0.6
110,446	-		GFF5009	0.32	-1.3
110,446	-		GFF5009	0.32	+1.2
110,446	-		GFF5009	0.32	-2.5
110,446	-		GFF5009	0.32	-1.0
110,508	+		GFF5009	0.40	-1.1
110,508	+		GFF5009	0.40	-0.8
110,508	+		GFF5009	0.40	-0.9
110,508	+		GFF5009	0.40	+0.1
110,508	+		GFF5009	0.40	-0.3
110,508	+		GFF5009	0.40	+0.3
110,508	+		GFF5009	0.40	-0.9
110,508	+		GFF5009	0.40	+0.9
110,508	+		GFF5009	0.40	-0.3
110,508	+		GFF5009	0.40	+1.5
110,508	+		GFF5009	0.40	+2.5
110,508	+		GFF5009	0.40	-2.1
110,508	+		GFF5009	0.40	-0.3
110,508	+		GFF5009	0.40	-1.6
110,508	+		GFF5009	0.40	-3.2
110,509	-		GFF5009	0.40	-1.9
110,509	-		GFF5009	0.40	+0.3
110,509	-		GFF5009	0.40	-1.4
110,509	-		GFF5009	0.40	-0.1
110,509	-		GFF5009	0.40	+1.0
110,509	-		GFF5009	0.40	-2.2
110,509	-		GFF5009	0.40	+0.7
110,509	-		GFF5009	0.40	-0.3
110,595	+		GFF5009	0.51	-3.0
110,595	+		GFF5009	0.51	+3.8
110,595	+		GFF5009	0.51	-1.0
110,595	+		GFF5009	0.51	-0.1
110,595	+		GFF5009	0.51	-2.1
110,595	+		GFF5009	0.51	+1.0
110,595	+		GFF5009	0.51	-0.6
110,595	+		GFF5009	0.51	-0.4
110,595	+		GFF5009	0.51	-0.4
110,595	+		GFF5009	0.51	-1.4
110,595	+		GFF5009	0.51	-0.8
110,595	+		GFF5009	0.51	+0.4
110,595	+		GFF5009	0.51	+0.2
110,595	+		GFF5009	0.51	-0.1
110,595	+		GFF5009	0.51	+1.5
110,595	+		GFF5009	0.51	-1.3
110,595	+		GFF5009	0.51	+0.7
110,595	+		GFF5009	0.51	-0.3
110,595	+		GFF5009	0.51	-1.7
110,595	+		GFF5009	0.51	+0.5
110,595	+		GFF5009	0.51	+0.9
110,595	+		GFF5009	0.51	+1.0
110,595	+		GFF5009	0.51	+1.1
110,595	+		GFF5009	0.51	-1.3
110,595	+		GFF5009	0.51	-2.4
110,595	+		GFF5009	0.51	-1.9
110,595	+		GFF5009	0.51	+1.1
110,596	+		GFF5009	0.51	-0.8
110,596	-		GFF5009	0.51	-0.7
110,596	-		GFF5009	0.51	-1.7
110,596	-		GFF5009	0.51	+0.9
110,596	-		GFF5009	0.51	-0.1
110,596	-		GFF5009	0.51	-1.2
110,596	-		GFF5009	0.51	-1.4
110,596	-		GFF5009	0.51	-0.9
110,596	-		GFF5009	0.51	-1.4
110,596	-		GFF5009	0.51	+0.6
110,596	-		GFF5009	0.51	-2.0
110,596	-		GFF5009	0.51	-0.2
110,596	-		GFF5009	0.51	-0.0
110,596	-		GFF5009	0.51	+0.5
110,596	-		GFF5009	0.51	-1.4
110,596	-		GFF5009	0.51	-2.3
110,596	-		GFF5009	0.51	+0.2
110,596	-		GFF5009	0.51	-1.6
110,596	-		GFF5009	0.51	+0.4
110,596	-		GFF5009	0.51	+0.1
110,596	-		GFF5009	0.51	+0.2
110,596	-		GFF5009	0.51	+0.7
110,596	-		GFF5009	0.51	-0.4
110,607	+		GFF5009	0.53	-1.4
110,607	+		GFF5009	0.53	+0.3
110,607	+		GFF5009	0.53	-0.3
110,607	+		GFF5009	0.53	+1.3
110,607	+		GFF5009	0.53	-0.4
110,607	+		GFF5009	0.53	-0.8
110,607	+		GFF5009	0.53	+0.2
110,607	+		GFF5009	0.53	-0.3
110,607	+		GFF5009	0.53	+0.6
110,607	+		GFF5009	0.53	-0.7
110,607	+		GFF5009	0.53	+1.5
110,607	+		GFF5009	0.53	-1.7
110,607	+		GFF5009	0.53	-2.7
110,607	+		GFF5009	0.53	-1.9
110,607	+		GFF5009	0.53	+0.7
110,607	+		GFF5009	0.53	+1.4
110,607	+		GFF5009	0.53	+0.3
110,607	+		GFF5009	0.53	+1.0
110,607	+		GFF5009	0.53	+1.1
110,607	+		GFF5009	0.53	+1.0
110,607	+		GFF5009	0.53	-0.8
110,607	+		GFF5009	0.53	-1.8
110,607	+		GFF5009	0.53	-0.1
110,607	+		GFF5009	0.53	-0.5
110,607	+		GFF5009	0.53	+2.5
110,607	+		GFF5009	0.53	+0.0
110,608	+		GFF5009	0.53	-1.6
110,608	-		GFF5009	0.53	+1.1
110,608	-		GFF5009	0.53	-0.2
110,608	-		GFF5009	0.53	-1.6
110,608	-		GFF5009	0.53	-0.1
110,608	-		GFF5009	0.53	-2.1
110,608	-		GFF5009	0.53	+1.3
110,608	-		GFF5009	0.53	-1.6
110,608	-		GFF5009	0.53	-1.8
110,608	-		GFF5009	0.53	-2.1
110,608	-		GFF5009	0.53	+1.0
110,608	-		GFF5009	0.53	-2.8
110,608	-		GFF5009	0.53	-1.0
110,608	-		GFF5009	0.53	-1.2
110,608	-		GFF5009	0.53	+0.7
110,608	-		GFF5009	0.53	+2.5
110,608	-		GFF5009	0.53	-0.3
110,608	-		GFF5009	0.53	-2.8
110,608	-		GFF5009	0.53	+0.1
110,608	-		GFF5009	0.53	+0.8
110,608	-		GFF5009	0.53	-0.4
110,608	-		GFF5009	0.53	-0.4
110,608	-		GFF5009	0.53	-1.4
110,608	-		GFF5009	0.53	+0.5
110,608	-		GFF5009	0.53	-1.0
110,608	-		GFF5009	0.53	-1.3
110,608	-		GFF5009	0.53	+2.1
110,608	-		GFF5009	0.53	+0.3
110,635	-		GFF5009	0.56	+0.2
110,767	+		GFF5009	0.73	-0.5
110,768	-		GFF5009	0.73	+1.7
110,768	-		GFF5009	0.73	-0.9
110,781	+		GFF5009	0.75	-1.7
110,781	+		GFF5009	0.75	-0.0
110,781	+		GFF5009	0.75	+0.9
110,781	+		GFF5009	0.75	+0.4
110,781	+		GFF5009	0.75	+2.2
110,781	+		GFF5009	0.75	-0.9
110,781	+		GFF5009	0.75	-1.4
110,782	-		GFF5009	0.75	-0.1
110,782	-		GFF5009	0.75	-0.1
110,782	-		GFF5009	0.75	-0.0
110,782	-		GFF5009	0.75	-2.9
110,782	-		GFF5009	0.75	+0.4
110,782	-		GFF5009	0.75	+1.5
110,782	-		GFF5009	0.75	+0.8
110,782	-		GFF5009	0.75	-0.5
110,782	-		GFF5009	0.75	-0.6
110,782	-		GFF5009	0.75	-0.6
110,856	+		GFF5009	0.85	+1.1
110,856	+		GFF5009	0.85	+0.2
110,856	+		GFF5009	0.85	-0.4
110,856	+		GFF5009	0.85	+1.7
110,856	+		GFF5009	0.85	-0.8
110,856	+		GFF5009	0.85	+0.2
110,856	+		GFF5009	0.85	+0.1
110,856	+		GFF5009	0.85	-2.1
110,856	+		GFF5009	0.85	+0.5
110,856	+		GFF5009	0.85	-0.8
110,856	+		GFF5009	0.85	-0.8
110,856	+		GFF5009	0.85	-0.7
110,856	+		GFF5009	0.85	+0.2
110,856	+		GFF5009	0.85	-3.0
110,857	-		GFF5009	0.85	-1.5
110,857	-		GFF5009	0.85	+0.1
110,857	-		GFF5009	0.85	-0.9
110,857	-		GFF5009	0.85	+0.9
110,857	-		GFF5009	0.85	-1.4
110,857	-		GFF5009	0.85	+0.7
110,857	-		GFF5009	0.85	-0.1
110,857	-		GFF5009	0.85	+1.1
110,857	-		GFF5009	0.85	-0.6
110,857	-		GFF5009	0.85	+0.2
110,857	-		GFF5009	0.85	+0.1
110,857	-		GFF5009	0.85	-2.0
110,857	-		GFF5009	0.85	+2.1
110,857	-		GFF5009	0.85	-1.2
110,857	-		GFF5009	0.85	-0.6
110,857	-		GFF5009	0.85	-1.1
110,857	-		GFF5009	0.85	+0.5
110,857	-		GFF5009	0.85	-0.6
110,857	-		GFF5009	0.85	+0.1
110,857	-		GFF5009	0.85	+0.3
110,857	-		GFF5009	0.85	+1.1
110,857	-		GFF5009	0.85	-3.5
110,907	+				-0.1
110,907	+				+0.2
110,907	+				-1.7
110,907	+				+0.1
110,907	+				-0.6
110,907	+				-0.8
110,907	+				+0.6
110,907	+				-0.2
110,907	+				+0.2
110,907	+				+0.6
110,908	-				-1.0
110,908	-				+0.2
110,908	-				+0.5
110,995	+				+0.2
110,995	+				-0.4
110,995	+				-1.7
110,995	+				+2.2
110,995	+				-1.6
110,995	+				-2.6
110,995	+				-1.7
110,995	+				+0.0
110,995	+				-1.1
110,995	+				-2.0
110,995	+				-1.2
110,995	+				+0.6
110,995	+				-3.5
110,995	+				-2.3
110,995	+				-0.2
110,995	+				-0.1
110,996	-				+1.7
110,996	-				+0.8
110,996	-				-3.0
110,996	-				-0.3
110,996	-				-1.0
110,996	-				-1.1
110,996	-				+0.8
110,996	-				-0.6
110,996	-				+0.5
110,996	-				-0.5
110,996	-				+0.7
110,996	-				+0.4
110,996	-				+0.7
111,028	+				-1.1
111,028	+				-2.4
111,028	+				-0.3
111,028	+				+0.5
111,028	+				-0.9
111,028	+				-1.1
111,028	+				-0.4
111,028	+				+0.2
111,029	-				+0.1
111,029	-				+2.2
111,029	-				-0.8
111,029	-				-1.7
111,029	-				-4.2
111,029	-				+1.0
111,029	-				-1.9
111,029	-				-3.3
111,029	-				+0.6
111,495	+		GFF5010	0.26	+0.2
111,495	+		GFF5010	0.26	-2.1
111,495	+		GFF5010	0.26	-1.8
111,495	+		GFF5010	0.26	-0.8
111,495	+		GFF5010	0.26	-1.6
111,495	+		GFF5010	0.26	-1.0
111,496	-		GFF5010	0.26	-0.8
111,496	-		GFF5010	0.26	-1.9
111,538	-		GFF5010	0.29	+0.2
111,538	-		GFF5010	0.29	-0.1
111,654	+		GFF5010	0.36	-0.7
111,654	+		GFF5010	0.36	-1.9
111,655	-		GFF5010	0.36	+2.1
111,675	+		GFF5010	0.37	+2.5
111,675	+		GFF5010	0.37	+1.5
111,675	+		GFF5010	0.37	-2.7
111,676	-		GFF5010	0.37	-2.4
111,676	-		GFF5010	0.37	+2.5
111,676	-		GFF5010	0.37	+1.3
111,676	-		GFF5010	0.37	-1.6
111,676	-		GFF5010	0.37	+1.9
111,813	+		GFF5010	0.46	-2.3
111,814	-		GFF5010	0.46	-2.0
111,918	+		GFF5010	0.53	-1.0
111,918	+		GFF5010	0.53	-0.7