Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4948 and GFF4949 overlap by 4 nucleotides GFF4949 and GFF4950 overlap by 4 nucleotides
GFF4948 - ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 43,846 to 44,892
GFF4948
GFF4949 - ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 44,889 to 46,412
GFF4949
GFF4950 - ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose), at 46,409 to 47,437
GFF4950
Position (kb) 44
45
46
47 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 43.975 kb on + strand, within GFF4948 at 43.976 kb on - strand, within GFF4948 at 43.976 kb on - strand, within GFF4948 at 44.008 kb on + strand, within GFF4948 at 44.009 kb on - strand, within GFF4948 at 44.009 kb on - strand, within GFF4948 at 44.023 kb on + strand, within GFF4948 at 44.024 kb on - strand, within GFF4948 at 44.090 kb on - strand, within GFF4948 at 44.479 kb on + strand, within GFF4948 at 44.480 kb on - strand, within GFF4948 at 44.692 kb on + strand, within GFF4948 at 44.692 kb on + strand, within GFF4948 at 44.692 kb on + strand, within GFF4948 at 44.692 kb on + strand, within GFF4948 at 44.692 kb on + strand, within GFF4948 at 44.693 kb on - strand, within GFF4948 at 44.693 kb on - strand, within GFF4948 at 44.693 kb on - strand, within GFF4948 at 44.693 kb on - strand, within GFF4948 at 44.693 kb on - strand, within GFF4948 at 44.693 kb on - strand, within GFF4948 at 44.842 kb on + strand at 44.854 kb on + strand at 44.855 kb on - strand at 44.855 kb on - strand at 44.855 kb on - strand at 44.855 kb on - strand at 45.241 kb on - strand, within GFF4949 at 45.483 kb on + strand, within GFF4949 at 45.483 kb on + strand, within GFF4949 at 45.484 kb on - strand, within GFF4949 at 45.484 kb on - strand, within GFF4949 at 45.484 kb on - strand, within GFF4949 at 45.509 kb on - strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.634 kb on - strand, within GFF4949 at 45.634 kb on - strand, within GFF4949 at 45.867 kb on + strand, within GFF4949 at 45.867 kb on + strand, within GFF4949 at 45.868 kb on - strand, within GFF4949 at 45.897 kb on + strand, within GFF4949 at 45.898 kb on - strand, within GFF4949 at 45.898 kb on - strand, within GFF4949 at 45.930 kb on + strand, within GFF4949 at 46.309 kb on + strand at 46.574 kb on + strand, within GFF4950 at 47.054 kb on + strand, within GFF4950 at 47.084 kb on + strand, within GFF4950 at 47.084 kb on + strand, within GFF4950 at 47.166 kb on - strand, within GFF4950 at 47.166 kb on - strand, within GFF4950 at 47.166 kb on - strand, within GFF4950
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 43,975 + GFF4948 0.12 -1.4 43,976 - GFF4948 0.12 +2.5 43,976 - GFF4948 0.12 -0.6 44,008 + GFF4948 0.15 +0.5 44,009 - GFF4948 0.16 +0.1 44,009 - GFF4948 0.16 -1.6 44,023 + GFF4948 0.17 +1.3 44,024 - GFF4948 0.17 +1.6 44,090 - GFF4948 0.23 -1.5 44,479 + GFF4948 0.60 +0.6 44,480 - GFF4948 0.61 +0.1 44,692 + GFF4948 0.81 -0.1 44,692 + GFF4948 0.81 -0.3 44,692 + GFF4948 0.81 +0.2 44,692 + GFF4948 0.81 -2.6 44,692 + GFF4948 0.81 -2.9 44,693 - GFF4948 0.81 -3.0 44,693 - GFF4948 0.81 +0.5 44,693 - GFF4948 0.81 +1.7 44,693 - GFF4948 0.81 -1.5 44,693 - GFF4948 0.81 -1.1 44,693 - GFF4948 0.81 -1.6 44,842 + +0.9 44,854 + +1.0 44,855 - -1.0 44,855 - +0.6 44,855 - +1.0 44,855 - +1.0 45,241 - GFF4949 0.23 +0.5 45,483 + GFF4949 0.39 -1.1 45,483 + GFF4949 0.39 +1.1 45,484 - GFF4949 0.39 -1.0 45,484 - GFF4949 0.39 -0.2 45,484 - GFF4949 0.39 -0.8 45,509 - GFF4949 0.41 -1.3 45,630 + GFF4949 0.49 -1.3 45,630 + GFF4949 0.49 +0.3 45,630 + GFF4949 0.49 -2.1 45,630 + GFF4949 0.49 +0.3 45,630 + GFF4949 0.49 -2.1 45,631 - GFF4949 0.49 -1.8 45,631 - GFF4949 0.49 -1.9 45,631 - GFF4949 0.49 -1.8 45,631 - GFF4949 0.49 +0.9 45,631 - GFF4949 0.49 -1.5 45,631 - GFF4949 0.49 -0.3 45,634 - GFF4949 0.49 +0.5 45,634 - GFF4949 0.49 -1.0 45,867 + GFF4949 0.64 -4.0 45,867 + GFF4949 0.64 -0.1 45,868 - GFF4949 0.64 -0.6 45,897 + GFF4949 0.66 -0.2 45,898 - GFF4949 0.66 -0.1 45,898 - GFF4949 0.66 -2.1 45,930 + GFF4949 0.68 +0.1 46,309 + -1.3 46,574 + GFF4950 0.16 -1.9 47,054 + GFF4950 0.63 -1.2 47,084 + GFF4950 0.66 +1.1 47,084 + GFF4950 0.66 +3.2 47,166 - GFF4950 0.74 +2.3 47,166 - GFF4950 0.74 -0.6 47,166 - GFF4950 0.74 +0.6
Or see this region's nucleotide sequence