Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF492 and GFF493 are separated by 272 nucleotides GFF493 and GFF494 overlap by 4 nucleotides
GFF492 - no description, at 532,511 to 533,476
GFF492
GFF493 - RND efflux system, inner membrane transporter, at 533,749 to 536,907
GFF493
GFF494 - RND efflux system, membrane fusion protein, at 536,904 to 538,115
GFF494
Position (kb) 533
534
535
536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 533.105 kb on + strand, within GFF492 at 533.105 kb on + strand, within GFF492 at 533.105 kb on + strand, within GFF492 at 533.105 kb on + strand, within GFF492 at 533.105 kb on + strand, within GFF492 at 533.105 kb on + strand, within GFF492 at 533.105 kb on + strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.106 kb on - strand, within GFF492 at 533.474 kb on + strand at 533.475 kb on - strand at 533.475 kb on - strand at 533.475 kb on - strand at 533.525 kb on + strand at 533.526 kb on - strand at 533.526 kb on - strand at 533.536 kb on - strand at 533.536 kb on - strand at 533.536 kb on - strand at 533.545 kb on + strand at 533.545 kb on + strand at 533.545 kb on + strand at 533.545 kb on + strand at 533.545 kb on + strand at 533.545 kb on + strand at 533.545 kb on + strand at 533.546 kb on - strand at 533.546 kb on - strand at 533.546 kb on - strand at 533.546 kb on - strand at 533.546 kb on - strand at 533.546 kb on - strand at 533.546 kb on - strand at 533.546 kb on - strand at 533.750 kb on + strand at 533.757 kb on + strand at 533.804 kb on + strand at 533.804 kb on + strand at 533.804 kb on + strand at 533.805 kb on - strand at 533.805 kb on - strand at 533.805 kb on - strand at 534.419 kb on + strand, within GFF493 at 534.419 kb on + strand, within GFF493 at 534.420 kb on - strand, within GFF493 at 534.518 kb on + strand, within GFF493 at 534.518 kb on + strand, within GFF493 at 534.518 kb on + strand, within GFF493 at 534.518 kb on + strand, within GFF493 at 534.518 kb on + strand, within GFF493 at 534.518 kb on + strand, within GFF493 at 534.518 kb on + strand, within GFF493 at 534.518 kb on + strand, within GFF493 at 534.518 kb on + strand, within GFF493 at 534.518 kb on + strand, within GFF493 at 534.519 kb on - strand, within GFF493 at 534.519 kb on - strand, within GFF493 at 534.519 kb on - strand, within GFF493 at 534.519 kb on - strand, within GFF493 at 534.519 kb on - strand, within GFF493 at 534.519 kb on - strand, within GFF493 at 535.016 kb on + strand, within GFF493 at 535.016 kb on + strand, within GFF493 at 535.016 kb on + strand, within GFF493 at 535.017 kb on - strand, within GFF493 at 535.017 kb on - strand, within GFF493 at 535.056 kb on + strand, within GFF493 at 535.056 kb on + strand, within GFF493 at 535.056 kb on + strand, within GFF493 at 535.056 kb on + strand, within GFF493 at 535.057 kb on - strand, within GFF493 at 535.215 kb on + strand, within GFF493 at 535.301 kb on + strand, within GFF493 at 535.301 kb on + strand, within GFF493 at 535.301 kb on + strand, within GFF493 at 535.302 kb on - strand, within GFF493 at 535.302 kb on - strand, within GFF493 at 535.302 kb on - strand, within GFF493 at 535.302 kb on - strand, within GFF493 at 535.302 kb on - strand, within GFF493 at 535.302 kb on - strand, within GFF493 at 535.302 kb on - strand, within GFF493 at 535.302 kb on - strand, within GFF493 at 535.302 kb on - strand, within GFF493 at 535.391 kb on + strand, within GFF493 at 535.391 kb on + strand, within GFF493 at 535.391 kb on + strand, within GFF493 at 535.392 kb on - strand, within GFF493 at 535.392 kb on - strand, within GFF493 at 535.392 kb on - strand, within GFF493 at 535.454 kb on + strand, within GFF493 at 535.454 kb on + strand, within GFF493 at 535.454 kb on + strand, within GFF493 at 535.454 kb on + strand, within GFF493 at 535.454 kb on + strand, within GFF493 at 535.454 kb on + strand, within GFF493 at 535.454 kb on + strand, within GFF493 at 535.454 kb on + strand, within GFF493 at 535.455 kb on - strand, within GFF493 at 535.455 kb on - strand, within GFF493 at 535.455 kb on - strand, within GFF493 at 535.455 kb on - strand, within GFF493 at 535.455 kb on - strand, within GFF493 at 535.455 kb on - strand, within GFF493 at 535.553 kb on + strand, within GFF493 at 535.553 kb on + strand, within GFF493 at 535.553 kb on + strand, within GFF493 at 535.553 kb on + strand, within GFF493 at 535.554 kb on - strand, within GFF493 at 535.554 kb on - strand, within GFF493 at 535.554 kb on - strand, within GFF493 at 535.554 kb on - strand, within GFF493 at 535.554 kb on - strand, within GFF493 at 535.554 kb on - strand, within GFF493 at 535.554 kb on - strand, within GFF493 at 535.554 kb on - strand, within GFF493 at 535.554 kb on - strand, within GFF493 at 535.554 kb on - strand, within GFF493 at 535.554 kb on - strand, within GFF493 at 535.554 kb on - strand, within GFF493 at 535.578 kb on - strand, within GFF493 at 535.578 kb on - strand, within GFF493 at 535.669 kb on + strand, within GFF493 at 535.669 kb on + strand, within GFF493 at 535.670 kb on - strand, within GFF493 at 535.694 kb on + strand, within GFF493 at 535.694 kb on + strand, within GFF493 at 535.694 kb on + strand, within GFF493 at 535.694 kb on + strand, within GFF493 at 535.694 kb on + strand, within GFF493 at 535.695 kb on - strand, within GFF493 at 535.695 kb on - strand, within GFF493 at 535.695 kb on - strand, within GFF493 at 535.695 kb on - strand, within GFF493 at 535.772 kb on + strand, within GFF493 at 535.773 kb on - strand, within GFF493 at 535.773 kb on - strand, within GFF493 at 536.069 kb on + strand, within GFF493 at 536.069 kb on + strand, within GFF493 at 536.070 kb on - strand, within GFF493 at 536.070 kb on - strand, within GFF493 at 536.070 kb on - strand, within GFF493 at 536.309 kb on + strand, within GFF493 at 536.309 kb on + strand, within GFF493 at 536.309 kb on + strand, within GFF493 at 536.310 kb on - strand, within GFF493 at 536.310 kb on - strand, within GFF493 at 536.310 kb on - strand, within GFF493 at 536.411 kb on + strand, within GFF493 at 536.411 kb on + strand, within GFF493 at 536.411 kb on + strand, within GFF493 at 536.412 kb on - strand, within GFF493 at 536.438 kb on + strand, within GFF493 at 536.439 kb on - strand, within GFF493 at 536.439 kb on - strand, within GFF493 at 536.450 kb on + strand, within GFF493 at 536.450 kb on + strand, within GFF493 at 536.450 kb on + strand, within GFF493 at 536.451 kb on - strand, within GFF493 at 536.451 kb on - strand, within GFF493 at 536.451 kb on - strand, within GFF493 at 536.540 kb on + strand, within GFF493 at 536.540 kb on + strand, within GFF493 at 536.541 kb on - strand, within GFF493 at 536.541 kb on - strand, within GFF493 at 536.618 kb on + strand at 536.618 kb on + strand at 536.618 kb on + strand at 536.618 kb on + strand at 536.619 kb on - strand at 536.619 kb on - strand at 536.619 kb on - strand at 536.619 kb on - strand at 536.640 kb on - strand at 536.717 kb on + strand at 536.717 kb on + strand at 536.717 kb on + strand at 536.717 kb on + strand at 536.718 kb on - strand at 536.718 kb on - strand at 536.718 kb on - strand at 536.780 kb on + strand at 536.780 kb on + strand at 536.780 kb on + strand at 536.781 kb on - strand at 536.819 kb on + strand at 536.820 kb on - strand at 536.820 kb on - strand at 536.820 kb on - strand at 537.031 kb on + strand, within GFF494 at 537.031 kb on + strand, within GFF494 at 537.031 kb on + strand, within GFF494 at 537.031 kb on + strand, within GFF494 at 537.031 kb on + strand, within GFF494 at 537.031 kb on + strand, within GFF494 at 537.032 kb on - strand, within GFF494 at 537.032 kb on - strand, within GFF494 at 537.032 kb on - strand, within GFF494 at 537.283 kb on + strand, within GFF494 at 537.283 kb on + strand, within GFF494 at 537.283 kb on + strand, within GFF494 at 537.283 kb on + strand, within GFF494 at 537.283 kb on + strand, within GFF494 at 537.283 kb on + strand, within GFF494 at 537.284 kb on - strand, within GFF494 at 537.284 kb on - strand, within GFF494 at 537.284 kb on - strand, within GFF494 at 537.340 kb on + strand, within GFF494 at 537.340 kb on + strand, within GFF494 at 537.340 kb on + strand, within GFF494 at 537.340 kb on + strand, within GFF494 at 537.340 kb on + strand, within GFF494 at 537.340 kb on + strand, within GFF494 at 537.340 kb on + strand, within GFF494 at 537.340 kb on + strand, within GFF494 at 537.340 kb on + strand, within GFF494 at 537.341 kb on - strand, within GFF494 at 537.341 kb on - strand, within GFF494 at 537.341 kb on - strand, within GFF494 at 537.341 kb on - strand, within GFF494 at 537.341 kb on - strand, within GFF494 at 537.598 kb on + strand, within GFF494 at 537.598 kb on + strand, within GFF494 at 537.598 kb on + strand, within GFF494 at 537.598 kb on + strand, within GFF494 at 537.598 kb on + strand, within GFF494 at 537.598 kb on + strand, within GFF494 at 537.599 kb on - strand, within GFF494 at 537.599 kb on - strand, within GFF494 at 537.599 kb on - strand, within GFF494 at 537.599 kb on - strand, within GFF494 at 537.599 kb on - strand, within GFF494 at 537.599 kb on - strand, within GFF494 at 537.599 kb on - strand, within GFF494 at 537.599 kb on - strand, within GFF494 at 537.753 kb on + strand, within GFF494 at 537.753 kb on + strand, within GFF494 at 537.754 kb on - strand, within GFF494 at 537.815 kb on - strand, within GFF494 at 537.815 kb on - strand, within GFF494
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 533,105 + GFF492 0.61 -1.0 533,105 + GFF492 0.61 +1.8 533,105 + GFF492 0.61 -2.9 533,105 + GFF492 0.61 +0.8 533,105 + GFF492 0.61 -3.5 533,105 + GFF492 0.61 +0.5 533,105 + GFF492 0.61 +1.8 533,106 - GFF492 0.62 -1.8 533,106 - GFF492 0.62 +0.5 533,106 - GFF492 0.62 -1.6 533,106 - GFF492 0.62 +0.0 533,106 - GFF492 0.62 -1.4 533,106 - GFF492 0.62 +1.1 533,106 - GFF492 0.62 -0.3 533,106 - GFF492 0.62 -1.9 533,106 - GFF492 0.62 -1.6 533,106 - GFF492 0.62 -0.5 533,106 - GFF492 0.62 -2.9 533,474 + -0.5 533,475 - +0.2 533,475 - -1.0 533,475 - +0.1 533,525 + +0.2 533,526 - -1.8 533,526 - +0.2 533,536 - +0.3 533,536 - +1.4 533,536 - +0.4 533,545 + -1.0 533,545 + +2.2 533,545 + +0.3 533,545 + -0.1 533,545 + +0.9 533,545 + -1.3 533,545 + -1.3 533,546 - -2.4 533,546 - -0.8 533,546 - -2.9 533,546 - -0.5 533,546 - -2.7 533,546 - -0.5 533,546 - +0.5 533,546 - -0.8 533,750 + -0.2 533,757 + +0.1 533,804 + +2.0 533,804 + +0.8 533,804 + -1.2 533,805 - -0.1 533,805 - +0.2 533,805 - -1.3 534,419 + GFF493 0.21 -1.6 534,419 + GFF493 0.21 +1.7 534,420 - GFF493 0.21 +1.3 534,518 + GFF493 0.24 -1.1 534,518 + GFF493 0.24 -2.4 534,518 + GFF493 0.24 +0.8 534,518 + GFF493 0.24 +1.3 534,518 + GFF493 0.24 -1.3 534,518 + GFF493 0.24 +0.8 534,518 + GFF493 0.24 -0.6 534,518 + GFF493 0.24 +1.8 534,518 + GFF493 0.24 +0.6 534,518 + GFF493 0.24 -1.2 534,519 - GFF493 0.24 +0.1 534,519 - GFF493 0.24 +1.4 534,519 - GFF493 0.24 -0.8 534,519 - GFF493 0.24 +0.0 534,519 - GFF493 0.24 -1.9 534,519 - GFF493 0.24 -1.0 535,016 + GFF493 0.40 +0.4 535,016 + GFF493 0.40 -1.0 535,016 + GFF493 0.40 +0.3 535,017 - GFF493 0.40 +0.5 535,017 - GFF493 0.40 -0.7 535,056 + GFF493 0.41 +1.8 535,056 + GFF493 0.41 +0.2 535,056 + GFF493 0.41 +1.0 535,056 + GFF493 0.41 +0.8 535,057 - GFF493 0.41 -0.1 535,215 + GFF493 0.46 -0.5 535,301 + GFF493 0.49 +1.8 535,301 + GFF493 0.49 +0.4 535,301 + GFF493 0.49 -0.9 535,302 - GFF493 0.49 -2.9 535,302 - GFF493 0.49 -1.2 535,302 - GFF493 0.49 -1.2 535,302 - GFF493 0.49 -0.5 535,302 - GFF493 0.49 -0.1 535,302 - GFF493 0.49 -1.8 535,302 - GFF493 0.49 -0.7 535,302 - GFF493 0.49 +1.3 535,302 - GFF493 0.49 -1.8 535,391 + GFF493 0.52 -0.6 535,391 + GFF493 0.52 +0.9 535,391 + GFF493 0.52 -0.1 535,392 - GFF493 0.52 +0.4 535,392 - GFF493 0.52 +0.8 535,392 - GFF493 0.52 -1.8 535,454 + GFF493 0.54 -0.9 535,454 + GFF493 0.54 +1.8 535,454 + GFF493 0.54 +1.2 535,454 + GFF493 0.54 -0.0 535,454 + GFF493 0.54 -0.8 535,454 + GFF493 0.54 +0.2 535,454 + GFF493 0.54 -3.4 535,454 + GFF493 0.54 -1.1 535,455 - GFF493 0.54 -0.2 535,455 - GFF493 0.54 +0.4 535,455 - GFF493 0.54 -1.0 535,455 - GFF493 0.54 -0.5 535,455 - GFF493 0.54 +0.8 535,455 - GFF493 0.54 +0.5 535,553 + GFF493 0.57 -1.2 535,553 + GFF493 0.57 +1.2 535,553 + GFF493 0.57 +1.3 535,553 + GFF493 0.57 +0.9 535,554 - GFF493 0.57 +0.1 535,554 - GFF493 0.57 -0.3 535,554 - GFF493 0.57 +0.8 535,554 - GFF493 0.57 -1.5 535,554 - GFF493 0.57 -2.6 535,554 - GFF493 0.57 +0.4 535,554 - GFF493 0.57 +1.8 535,554 - GFF493 0.57 -3.7 535,554 - GFF493 0.57 -0.2 535,554 - GFF493 0.57 +2.1 535,554 - GFF493 0.57 +0.8 535,554 - GFF493 0.57 +0.8 535,578 - GFF493 0.58 -2.1 535,578 - GFF493 0.58 -1.0 535,669 + GFF493 0.61 -1.5 535,669 + GFF493 0.61 -1.9 535,670 - GFF493 0.61 -0.5 535,694 + GFF493 0.62 +0.1 535,694 + GFF493 0.62 +0.2 535,694 + GFF493 0.62 +0.1 535,694 + GFF493 0.62 -1.4 535,694 + GFF493 0.62 +0.0 535,695 - GFF493 0.62 +0.0 535,695 - GFF493 0.62 +1.2 535,695 - GFF493 0.62 -1.0 535,695 - GFF493 0.62 -0.2 535,772 + GFF493 0.64 -0.6 535,773 - GFF493 0.64 -0.0 535,773 - GFF493 0.64 +0.0 536,069 + GFF493 0.73 -0.8 536,069 + GFF493 0.73 -0.8 536,070 - GFF493 0.73 -2.1 536,070 - GFF493 0.73 +1.1 536,070 - GFF493 0.73 -2.2 536,309 + GFF493 0.81 +0.5 536,309 + GFF493 0.81 -0.4 536,309 + GFF493 0.81 -1.3 536,310 - GFF493 0.81 -0.6 536,310 - GFF493 0.81 -0.3 536,310 - GFF493 0.81 -1.2 536,411 + GFF493 0.84 -2.5 536,411 + GFF493 0.84 +0.3 536,411 + GFF493 0.84 -2.8 536,412 - GFF493 0.84 +0.2 536,438 + GFF493 0.85 -1.2 536,439 - GFF493 0.85 +0.7 536,439 - GFF493 0.85 -0.9 536,450 + GFF493 0.86 -1.9 536,450 + GFF493 0.86 +0.0 536,450 + GFF493 0.86 -0.3 536,451 - GFF493 0.86 -0.1 536,451 - GFF493 0.86 -0.2 536,451 - GFF493 0.86 -1.8 536,540 + GFF493 0.88 +0.0 536,540 + GFF493 0.88 -1.2 536,541 - GFF493 0.88 -0.6 536,541 - GFF493 0.88 -2.3 536,618 + -0.5 536,618 + +0.4 536,618 + +0.2 536,618 + +1.6 536,619 - +3.0 536,619 - -1.4 536,619 - +0.7 536,619 - -0.4 536,640 - +1.4 536,717 + +0.5 536,717 + +1.0 536,717 + +0.5 536,717 + -1.5 536,718 - -1.4 536,718 - +2.6 536,718 - -1.9 536,780 + +1.0 536,780 + -0.9 536,780 + -2.9 536,781 - -2.2 536,819 + +1.9 536,820 - -0.1 536,820 - -0.2 536,820 - -0.0 537,031 + GFF494 0.10 -0.2 537,031 + GFF494 0.10 -1.8 537,031 + GFF494 0.10 +0.7 537,031 + GFF494 0.10 -2.6 537,031 + GFF494 0.10 -3.7 537,031 + GFF494 0.10 -1.5 537,032 - GFF494 0.11 -0.5 537,032 - GFF494 0.11 +1.2 537,032 - GFF494 0.11 -0.4 537,283 + GFF494 0.31 -0.3 537,283 + GFF494 0.31 +0.2 537,283 + GFF494 0.31 -1.3 537,283 + GFF494 0.31 +0.3 537,283 + GFF494 0.31 +0.0 537,283 + GFF494 0.31 -2.2 537,284 - GFF494 0.31 +1.3 537,284 - GFF494 0.31 +1.3 537,284 - GFF494 0.31 -3.7 537,340 + GFF494 0.36 -0.4 537,340 + GFF494 0.36 -0.2 537,340 + GFF494 0.36 +1.8 537,340 + GFF494 0.36 +2.0 537,340 + GFF494 0.36 -1.5 537,340 + GFF494 0.36 -1.5 537,340 + GFF494 0.36 +0.1 537,340 + GFF494 0.36 -1.5 537,340 + GFF494 0.36 -2.8 537,341 - GFF494 0.36 -1.4 537,341 - GFF494 0.36 -2.1 537,341 - GFF494 0.36 +1.5 537,341 - GFF494 0.36 -1.0 537,341 - GFF494 0.36 -0.1 537,598 + GFF494 0.57 -0.6 537,598 + GFF494 0.57 -2.5 537,598 + GFF494 0.57 -2.2 537,598 + GFF494 0.57 +1.6 537,598 + GFF494 0.57 +0.5 537,598 + GFF494 0.57 +0.5 537,599 - GFF494 0.57 +0.6 537,599 - GFF494 0.57 +0.7 537,599 - GFF494 0.57 +0.8 537,599 - GFF494 0.57 -0.2 537,599 - GFF494 0.57 +1.1 537,599 - GFF494 0.57 -1.0 537,599 - GFF494 0.57 +1.4 537,599 - GFF494 0.57 -1.0 537,753 + GFF494 0.70 -1.0 537,753 + GFF494 0.70 -0.4 537,754 - GFF494 0.70 -0.8 537,815 - GFF494 0.75 -0.1 537,815 - GFF494 0.75 -0.6
Or see this region's nucleotide sequence