Strain Fitness in Variovorax sp. SCN45 around GFF4909

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
1,106	+		GFF4908	0.61	-2.3
1,106	+		GFF4908	0.61	-2.2
1,106	+		GFF4908	0.61	+0.2
1,106	+		GFF4908	0.61	-3.0
1,106	+		GFF4908	0.61	+0.6
1,106	+		GFF4908	0.61	+1.2
1,106	+		GFF4908	0.61	-3.0
1,107	-		GFF4908	0.61	+0.1
1,107	-		GFF4908	0.61	-1.7
1,107	-		GFF4908	0.61	-0.5
1,107	-		GFF4908	0.61	-2.8
1,107	-		GFF4908	0.61	-2.0
1,107	-		GFF4908	0.61	-2.6
1,107	-		GFF4908	0.61	+0.8
1,107	-		GFF4908	0.61	+0.5
1,107	-		GFF4908	0.61	-0.3
1,107	-		GFF4908	0.61	-0.9
1,107	-		GFF4908	0.61	-1.3
1,107	-		GFF4908	0.61	-2.7
1,107	-		GFF4908	0.61	+0.5
1,107	-		GFF4908	0.61	-0.6
1,107	-		GFF4908	0.61	-1.2
1,107	-		GFF4908	0.61	-0.8
1,107	-		GFF4908	0.61	+0.9
1,107	-		GFF4908	0.61	-2.8
1,107	-		GFF4908	0.61	+0.5
1,107	-		GFF4908	0.61	-0.1
1,136	+		GFF4908	0.63	-1.7
1,136	+		GFF4908	0.63	-1.1
1,136	+		GFF4908	0.63	-3.0
1,136	+		GFF4908	0.63	-4.9
1,136	+		GFF4908	0.63	+0.2
1,137	-		GFF4908	0.64	-1.7
1,137	-		GFF4908	0.64	-0.3
1,137	-		GFF4908	0.64	-0.3
1,400	+		GFF4908	0.87	-1.6
1,401	-		GFF4908	0.87	-2.4
1,401	-		GFF4908	0.87	-0.7
1,401	-		GFF4908	0.87	-3.0
1,401	-		GFF4908	0.87	-2.4
1,496	-				+0.5
1,496	-				-2.5
1,496	-				-1.8
1,496	-				-0.3
1,540	+				-3.4
1,540	+				-2.6
1,540	+				-2.2
1,540	+				+0.8
1,540	+				+1.3
1,548	+				-0.3
1,548	+				-2.1
1,548	+				-1.5
1,548	+				-1.1
1,548	+				-1.6
1,548	+				+0.9
1,548	+				-1.6
1,548	+				-0.4
1,548	+				-3.2
1,548	+				-0.3
1,548	+				-3.1
1,596	+				-3.2
1,596	+				+0.9
1,596	+				-0.7
1,596	+				-1.2
1,596	+				-1.4
1,596	+				+0.9
1,596	+				-1.8
1,596	+				+1.9
1,596	+				-2.5
1,596	+				+2.1
1,596	+				-0.3
1,596	+				-0.2
1,597	-				+0.3
1,597	-				-0.5
1,597	-				-1.1
1,597	-				+1.5
1,597	-				+1.3
1,597	-				+0.5
1,597	-				-1.2
1,597	-				+1.3
1,597	-				-2.6
1,607	+				+1.0
1,607	+				+0.9
1,607	+				+2.3
1,607	+				+0.9
1,608	-				-0.3
1,608	-				+0.4
1,608	-				+1.3
1,627	+				+3.0
1,673	+				+0.2
1,673	+				+2.8
1,673	+				+0.9
1,673	+				+1.9
1,673	+				+0.5
1,674	-				+0.8
1,681	-				+0.5
1,681	-				+1.9
1,712	-				+0.2
1,779	+				-1.8
1,779	+				-1.1
1,780	-				-0.9
1,802	+				+0.5
1,802	+				+1.6
1,803	-				-0.1
1,817	-				-0.9
1,819	+				-1.5
1,844	-				-2.0
1,844	-				-1.1
1,847	+				-1.9
1,847	+				+0.6
1,848	-				+3.5
1,854	+				-0.1
1,855	-				-2.1
1,857	+				+0.6
1,857	+				+1.3
1,857	+				-1.5
1,882	-				-0.9
1,891	+				-3.3
1,891	+				+1.1
1,891	+				-2.6
1,891	+				+1.5
1,891	+				+1.5
1,891	+				-0.5
1,892	-				-0.5
1,930	+				+0.7
1,931	-				-0.3
1,945	-				-0.3
1,945	-				+0.4
1,997	+				-2.0
1,997	+				+1.9
1,997	+				+1.4
1,997	+				-1.3
1,997	+				+1.0
1,997	+				-2.2
1,997	+				+1.9
1,997	+				-0.6
1,997	+				-0.6
1,998	-				-0.4
1,998	-				-1.1
1,998	-				-0.1
1,998	-				+0.3
1,998	-				+2.8
1,998	-				+0.9
1,998	-				+0.4
1,998	-				+4.6
1,998	-				-2.0
1,998	-				-0.3
1,998	-				-2.6
1,998	-				+1.1
2,005	+				+0.4
2,005	+				+2.5
2,006	-				+0.1
2,006	-				-1.4
2,006	-				+1.4
2,006	-				+1.2
2,006	-				+0.9
2,137	+		GFF4909	0.20	-0.2
2,137	+		GFF4909	0.20	+1.4
2,137	+		GFF4909	0.20	-0.1
2,137	+		GFF4909	0.20	-0.9
2,137	+		GFF4909	0.20	-0.7
2,137	+		GFF4909	0.20	-2.0
2,138	-		GFF4909	0.20	+0.2
2,138	-		GFF4909	0.20	+0.9
2,138	-		GFF4909	0.20	+0.4
2,138	-		GFF4909	0.20	-1.2
2,138	-		GFF4909	0.20	+0.3
2,138	-		GFF4909	0.20	+0.8
2,302	+		GFF4909	0.43	-0.3
2,352	+		GFF4909	0.50	+0.9
2,352	+		GFF4909	0.50	+2.0
2,352	+		GFF4909	0.50	-1.4
2,352	+		GFF4909	0.50	-0.3
2,353	-		GFF4909	0.50	-1.9
2,353	-		GFF4909	0.50	+1.3
2,391	+		GFF4909	0.56	-2.1
2,391	+		GFF4909	0.56	+0.7
2,391	+		GFF4909	0.56	+0.0
2,392	-		GFF4909	0.56	-0.8
2,392	-		GFF4909	0.56	+1.4
2,400	+		GFF4909	0.57	+1.5
2,400	+		GFF4909	0.57	-0.1
2,401	-		GFF4909	0.57	-1.7
2,460	+		GFF4909	0.65	+0.7
2,460	+		GFF4909	0.65	+0.2
2,460	+		GFF4909	0.65	+0.6
2,461	-		GFF4909	0.65	+0.7
2,461	-		GFF4909	0.65	+1.3
2,461	-		GFF4909	0.65	+2.5
2,640	+				+3.0
2,640	+				+0.2
2,640	+				+0.8
2,640	+				-2.1
2,640	+				+0.8
2,640	+				-0.0
2,640	+				-0.4
2,640	+				+0.3
2,640	+				+0.5
2,640	+				+0.0
2,640	+				-0.6
2,640	+				-1.6
2,640	+				-0.7
2,640	+				+0.9
2,640	+				+0.4
2,640	+				+0.8
2,640	+				-0.6
2,641	-				+2.4
2,641	-				+0.9
2,641	-				+0.7
2,641	-				-1.3
2,641	-				-0.6
2,641	-				+1.1
2,641	-				-2.8
2,641	-				-1.3
2,641	-				-0.2
2,641	-				+1.0
2,735	+				+1.2
2,736	-				-0.1
2,736	-				+0.0
2,760	+				-0.3
2,760	+				+0.5
2,761	-				+1.1
2,761	-				-0.9
3,088	+		GFF4910	0.71	+1.2
3,088	+		GFF4910	0.71	+0.9
3,088	+		GFF4910	0.71	+0.5
3,089	-		GFF4910	0.71	-2.5
3,089	-		GFF4910	0.71	+1.8
3,089	-		GFF4910	0.71	+0.2
3,089	-		GFF4910	0.71	-1.4
3,089	-		GFF4910	0.71	+3.2
3,089	-		GFF4910	0.71	+0.9
3,089	-		GFF4910	0.71	+2.3
3,089	-		GFF4910	0.71	-0.1
3,089	-		GFF4910	0.71	+1.2
3,089	-		GFF4910	0.71	+0.9
3,089	-		GFF4910	0.71	-0.9
3,089	-		GFF4910	0.71	-0.6
3,089	-		GFF4910	0.71	-0.9
3,089	-		GFF4910	0.71	-0.0
3,103	+		GFF4910	0.75	+0.2
3,103	+		GFF4910	0.75	-0.0
3,104	-		GFF4910	0.75	+1.5
3,104	-		GFF4910	0.75	+2.4
3,104	-		GFF4910	0.75	+0.2
3,179	+				-0.6
3,179	+				-2.9
3,179	+				+1.1
3,179	+				-0.8
3,179	+				+1.0
3,179	+				+1.0
3,180	-				+3.4
3,196	+				+0.2
3,197	-				+0.6
3,208	+				-2.4
3,208	+				-1.3
3,208	+				-2.3
3,208	+				+0.3
3,208	+				-1.3
3,208	+				-1.2
3,209	-				+1.9
3,209	-				+0.7
3,213	+				-1.6
3,213	+				-0.3
3,213	+				-1.3
3,213	+				-2.0
3,213	+				-0.8
3,213	+				+0.3
3,213	+				-0.6
3,213	+				+0.5
3,213	+				-1.2
3,213	+				-0.9
3,213	+				+0.5
3,213	+				-0.5
3,213	+				+0.2
3,214	-				+0.9
3,214	-				-2.0
3,214	-				-0.6
3,214	-				-2.2
3,214	-				-1.5
3,214	-				+0.8
3,214	-				-0.1
3,214	-				-2.8
3,214	-				+0.9
3,216	+				-1.2
3,216	+				+0.2
3,216	+				-1.4
3,216	+				-1.8
3,216	+				-0.6
3,216	+				-1.2
3,216	+				+0.9
3,216	+				+0.4
3,216	+				-1.1
3,216	+				-0.4
3,216	+				+2.0
3,216	+				-0.3
3,216	+				+0.5
3,216	+				-2.7
3,216	+				-0.6
3,216	+				-2.0
3,216	+				-0.1
3,216	+				+1.4
3,216	+				-0.2
3,217	-				-1.1
3,217	-				-0.1
3,217	-				+1.3
3,217	-				+1.2
3,217	-				+3.5
3,217	-				+1.1
3,217	-				-1.3
3,217	-				-2.2
3,217	-				+1.2
3,217	-				-1.8
3,217	-				-0.3
3,217	-				+1.2
3,217	-				-0.9
3,217	-				-1.3
3,217	-				-0.1
3,217	-				+1.4
3,217	-				-0.1
3,217	-				-0.7
3,217	-				+0.5
3,220	+				-4.2
3,221	-				-0.5
3,221	-				-0.6
3,460	+		GFF4911	0.45	+0.6
3,460	+		GFF4911	0.45	-0.6
3,460	+		GFF4911	0.45	+1.1
3,460	+		GFF4911	0.45	-1.6
3,460	+		GFF4911	0.45	-1.9
3,460	+		GFF4911	0.45	-1.9
3,460	+		GFF4911	0.45	+1.1
3,460	+		GFF4911	0.45	-0.1
3,460	+		GFF4911	0.45	+0.2
3,460	+		GFF4911	0.45	+1.7
3,460	-		GFF4911	0.45	+1.2
3,461	-		GFF4911	0.45	+2.3
3,461	-		GFF4911	0.45	-0.1
3,461	-		GFF4911	0.45	+2.2
3,461	-		GFF4911	0.45	+0.2
3,461	-		GFF4911	0.45	-3.3
3,461	-		GFF4911	0.45	-1.7
3,461	-		GFF4911	0.45	-2.0
3,461	-		GFF4911	0.45	+2.5
3,461	-		GFF4911	0.45	-0.3
3,461	-		GFF4911	0.45	-3.4
3,461	-		GFF4911	0.45	+1.4
3,461	-		GFF4911	0.45	+0.2
3,461	-		GFF4911	0.45	+2.0
3,461	-		GFF4911	0.45	+0.3
3,461	-		GFF4911	0.45	-0.1
3,508	+		GFF4911	0.54	+0.7
3,508	+		GFF4911	0.54	+0.9
3,508	+		GFF4911	0.54	-0.3
3,508	+		GFF4911	0.54	-0.0
3,508	+		GFF4911	0.54	-0.1
3,508	+		GFF4911	0.54	+0.9
3,508	+		GFF4911	0.54	-2.3
3,508	+		GFF4911	0.54	+0.6
3,508	+		GFF4911	0.54	-0.8
3,508	+		GFF4911	0.54	-0.5
3,508	+		GFF4911	0.54	-2.4
3,508	+		GFF4911	0.54	-0.5
3,508	+		GFF4911	0.54	-1.4
3,508	+		GFF4911	0.54	-2.5
3,508	+		GFF4911	0.54	-1.3
3,508	+		GFF4911	0.54	+0.8
3,508	+		GFF4911	0.54	-1.4
3,508	+		GFF4911	0.54	+0.6
3,508	+		GFF4911	0.54	-2.6
3,508	+		GFF4911	0.54	-0.7
3,508	+		GFF4911	0.54	-0.7
3,508	+		GFF4911	0.54	-1.1
3,508	+		GFF4911	0.54	-2.7
3,508	+		GFF4911	0.54	+1.2
3,508	+		GFF4911	0.54	-0.6
3,508	+		GFF4911	0.54	+0.1
3,508	+		GFF4911	0.54	-1.1
3,508	+		GFF4911	0.54	-0.8
3,508	+		GFF4911	0.54	-1.0
3,509	-		GFF4911	0.54	-1.0
3,509	-		GFF4911	0.54	+0.3
3,509	-		GFF4911	0.54	-2.6
3,509	-		GFF4911	0.54	-0.3
3,509	-		GFF4911	0.54	+1.6
3,509	-		GFF4911	0.54	+0.2
3,509	-		GFF4911	0.54	-0.4
3,509	-		GFF4911	0.54	-1.3
3,509	-		GFF4911	0.54	-2.3
3,509	-		GFF4911	0.54	+0.3
3,509	-		GFF4911	0.54	+0.5
3,509	-		GFF4911	0.54	-1.8
3,509	-		GFF4911	0.54	-0.9
3,644	+		GFF4911	0.82	+0.7
3,644	+		GFF4911	0.82	+1.6
3,644	+		GFF4911	0.82	-0.1
3,644	+		GFF4911	0.82	+0.7
3,645	-		GFF4911	0.82	-1.5
3,645	-		GFF4911	0.82	-0.3
3,645	-		GFF4911	0.82	-3.0
3,645	-		GFF4911	0.82	+0.5
3,645	-		GFF4911	0.82	+1.2
3,664	+		GFF4911	0.86	+2.5
3,664	+		GFF4911	0.86	-0.6
3,664	+		GFF4911	0.86	-0.4
3,664	+		GFF4911	0.86	+1.1
3,664	+		GFF4911	0.86	-3.5
3,665	-		GFF4911	0.86	-1.4
3,665	-		GFF4911	0.86	+0.2
3,683	-				-0.6
3,683	-				-1.3