Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4849 and GFF4850 overlap by 4 nucleotides GFF4850 and GFF4851 overlap by 4 nucleotides
GFF4849 - Conjugative transfer protein TrbB, at 218,804 to 219,841
GFF4849
GFF4850 - CopG domain-containing protein, at 219,838 to 220,302
GFF4850
GFF4851 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 220,299 to 222,317
GFF4851
Position (kb) 219
220
221 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 218.902 kb on - strand at 218.902 kb on - strand at 219.119 kb on + strand, within GFF4849 at 219.119 kb on + strand, within GFF4849 at 219.119 kb on + strand, within GFF4849 at 219.120 kb on - strand, within GFF4849 at 219.245 kb on + strand, within GFF4849 at 219.245 kb on + strand, within GFF4849 at 219.246 kb on - strand, within GFF4849 at 219.453 kb on + strand, within GFF4849 at 219.841 kb on + strand at 219.841 kb on + strand at 219.842 kb on - strand at 219.842 kb on - strand at 219.842 kb on - strand at 220.302 kb on + strand at 220.302 kb on + strand at 220.302 kb on + strand at 220.302 kb on + strand at 220.302 kb on + strand at 220.302 kb on + strand at 220.302 kb on + strand at 220.303 kb on - strand at 220.303 kb on - strand at 220.303 kb on - strand at 220.303 kb on - strand at 220.303 kb on - strand at 220.303 kb on - strand at 220.447 kb on + strand at 220.447 kb on + strand at 220.447 kb on + strand at 220.447 kb on + strand at 220.447 kb on + strand at 220.447 kb on + strand at 220.447 kb on + strand at 220.448 kb on - strand at 220.448 kb on - strand at 220.448 kb on - strand at 220.448 kb on - strand at 220.681 kb on + strand, within GFF4851 at 220.681 kb on + strand, within GFF4851 at 220.682 kb on - strand, within GFF4851 at 220.682 kb on - strand, within GFF4851 at 220.684 kb on + strand, within GFF4851 at 220.685 kb on - strand, within GFF4851 at 220.758 kb on + strand, within GFF4851 at 220.758 kb on + strand, within GFF4851 at 220.759 kb on - strand, within GFF4851 at 220.759 kb on - strand, within GFF4851 at 220.759 kb on - strand, within GFF4851 at 220.847 kb on - strand, within GFF4851 at 220.975 kb on + strand, within GFF4851 at 220.976 kb on - strand, within GFF4851 at 220.976 kb on - strand, within GFF4851 at 221.103 kb on + strand, within GFF4851 at 221.103 kb on + strand, within GFF4851 at 221.103 kb on + strand, within GFF4851 at 221.103 kb on + strand, within GFF4851 at 221.104 kb on - strand, within GFF4851 at 221.104 kb on - strand, within GFF4851 at 221.234 kb on - strand, within GFF4851 at 221.234 kb on - strand, within GFF4851
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 218,902 - +1.1 218,902 - -1.5 219,119 + GFF4849 0.30 -0.9 219,119 + GFF4849 0.30 -3.9 219,119 + GFF4849 0.30 -1.3 219,120 - GFF4849 0.30 -2.5 219,245 + GFF4849 0.42 +0.0 219,245 + GFF4849 0.42 +0.8 219,246 - GFF4849 0.43 +0.8 219,453 + GFF4849 0.63 -1.7 219,841 + -1.5 219,841 + -0.8 219,842 - -4.2 219,842 - -2.2 219,842 - -1.7 220,302 + -1.4 220,302 + +1.3 220,302 + -1.8 220,302 + +0.9 220,302 + +1.9 220,302 + +0.4 220,302 + -0.2 220,303 - -1.2 220,303 - -0.8 220,303 - -0.2 220,303 - -2.3 220,303 - -0.7 220,303 - -0.7 220,447 + -0.4 220,447 + -0.1 220,447 + -1.4 220,447 + +3.3 220,447 + -1.5 220,447 + +1.9 220,447 + +0.1 220,448 - -1.2 220,448 - -2.6 220,448 - -0.1 220,448 - -2.6 220,681 + GFF4851 0.19 -0.7 220,681 + GFF4851 0.19 -0.7 220,682 - GFF4851 0.19 -0.5 220,682 - GFF4851 0.19 +0.6 220,684 + GFF4851 0.19 +0.6 220,685 - GFF4851 0.19 -2.3 220,758 + GFF4851 0.23 -1.7 220,758 + GFF4851 0.23 -1.2 220,759 - GFF4851 0.23 -1.0 220,759 - GFF4851 0.23 -0.9 220,759 - GFF4851 0.23 -0.1 220,847 - GFF4851 0.27 -0.7 220,975 + GFF4851 0.33 -1.8 220,976 - GFF4851 0.34 +0.9 220,976 - GFF4851 0.34 -0.8 221,103 + GFF4851 0.40 -0.9 221,103 + GFF4851 0.40 -0.5 221,103 + GFF4851 0.40 +0.5 221,103 + GFF4851 0.40 -2.2 221,104 - GFF4851 0.40 -2.0 221,104 - GFF4851 0.40 -1.3 221,234 - GFF4851 0.46 -0.9 221,234 - GFF4851 0.46 -0.5
Or see this region's nucleotide sequence