Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4779 and GFF4780 are separated by 76 nucleotides GFF4780 and GFF4781 are separated by 93 nucleotides GFF4781 and GFF4782 overlap by 1 nucleotides
GFF4779 - Broad-specificity amino acid ABC transporter, permease protein 2, at 146,784 to 147,776
GFF4779
GFF4780 - hypothetical protein, at 147,853 to 148,308
GFF4780
GFF4781 - AttH component of AttEFGH ABC transport system, at 148,402 to 149,469
GFF4781
GFF4782 - Pyridoxal-5'-phosphate-dependent enzyme beta superfamily (fold type II), at 149,469 to 150,545
GFF4782
Position (kb) 148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 147.774 kb on + strand at 147.775 kb on - strand at 147.775 kb on - strand at 147.775 kb on - strand at 148.053 kb on - strand, within GFF4780 at 148.053 kb on - strand, within GFF4780 at 148.058 kb on + strand, within GFF4780 at 148.058 kb on + strand, within GFF4780 at 148.059 kb on - strand, within GFF4780 at 148.100 kb on + strand, within GFF4780 at 148.100 kb on + strand, within GFF4780 at 148.100 kb on + strand, within GFF4780 at 148.100 kb on + strand, within GFF4780 at 148.101 kb on - strand, within GFF4780 at 148.308 kb on + strand at 148.343 kb on + strand at 148.386 kb on + strand at 148.386 kb on + strand at 148.387 kb on - strand at 148.387 kb on - strand at 148.387 kb on - strand at 148.394 kb on + strand at 148.394 kb on + strand at 148.394 kb on + strand at 148.395 kb on - strand at 148.395 kb on - strand at 148.395 kb on - strand at 148.403 kb on + strand at 148.403 kb on + strand at 148.403 kb on + strand at 148.404 kb on - strand at 148.404 kb on - strand at 148.404 kb on - strand at 148.919 kb on + strand, within GFF4781 at 148.919 kb on + strand, within GFF4781 at 148.920 kb on - strand, within GFF4781 at 148.920 kb on - strand, within GFF4781 at 148.922 kb on + strand, within GFF4781 at 148.922 kb on + strand, within GFF4781 at 148.923 kb on - strand, within GFF4781 at 148.923 kb on - strand, within GFF4781 at 148.923 kb on - strand, within GFF4781 at 148.923 kb on - strand, within GFF4781 at 148.925 kb on + strand, within GFF4781 at 148.925 kb on + strand, within GFF4781 at 148.925 kb on + strand, within GFF4781 at 148.926 kb on - strand, within GFF4781 at 148.926 kb on - strand, within GFF4781 at 148.926 kb on - strand, within GFF4781 at 148.926 kb on - strand, within GFF4781 at 149.048 kb on + strand, within GFF4781 at 149.049 kb on - strand, within GFF4781 at 149.264 kb on + strand, within GFF4781 at 149.321 kb on + strand, within GFF4781 at 149.321 kb on + strand, within GFF4781 at 149.321 kb on + strand, within GFF4781 at 149.321 kb on + strand, within GFF4781 at 149.321 kb on + strand, within GFF4781 at 149.321 kb on + strand, within GFF4781 at 149.322 kb on - strand, within GFF4781 at 149.532 kb on + strand at 149.532 kb on + strand at 149.564 kb on - strand at 149.851 kb on + strand, within GFF4782 at 149.851 kb on + strand, within GFF4782 at 149.851 kb on + strand, within GFF4782 at 149.852 kb on - strand, within GFF4782 at 149.921 kb on - strand, within GFF4782 at 150.064 kb on + strand, within GFF4782 at 150.064 kb on + strand, within GFF4782 at 150.064 kb on + strand, within GFF4782 at 150.065 kb on - strand, within GFF4782 at 150.082 kb on + strand, within GFF4782 at 150.082 kb on + strand, within GFF4782 at 150.082 kb on + strand, within GFF4782 at 150.083 kb on - strand, within GFF4782 at 150.083 kb on - strand, within GFF4782 at 150.083 kb on - strand, within GFF4782 at 150.124 kb on + strand, within GFF4782 at 150.124 kb on + strand, within GFF4782 at 150.124 kb on + strand, within GFF4782 at 150.124 kb on + strand, within GFF4782 at 150.166 kb on + strand, within GFF4782 at 150.167 kb on - strand, within GFF4782 at 150.250 kb on + strand, within GFF4782 at 150.250 kb on + strand, within GFF4782 at 150.332 kb on - strand, within GFF4782 at 150.332 kb on - strand, within GFF4782 at 150.400 kb on + strand, within GFF4782 at 150.401 kb on - strand, within GFF4782 at 150.401 kb on - strand, within GFF4782
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 147,774 + +0.6 147,775 - -0.1 147,775 - -0.9 147,775 - +0.9 148,053 - GFF4780 0.44 -1.1 148,053 - GFF4780 0.44 -0.4 148,058 + GFF4780 0.45 -0.9 148,058 + GFF4780 0.45 -0.7 148,059 - GFF4780 0.45 -0.7 148,100 + GFF4780 0.54 -1.3 148,100 + GFF4780 0.54 +2.3 148,100 + GFF4780 0.54 -2.2 148,100 + GFF4780 0.54 -0.4 148,101 - GFF4780 0.54 -1.4 148,308 + -0.6 148,343 + -0.7 148,386 + -2.8 148,386 + -2.2 148,387 - -0.7 148,387 - +1.2 148,387 - -1.1 148,394 + +0.1 148,394 + -0.3 148,394 + +0.7 148,395 - +2.7 148,395 - -1.5 148,395 - +1.1 148,403 + -0.4 148,403 + +0.2 148,403 + -0.1 148,404 - +2.0 148,404 - +0.9 148,404 - +0.4 148,919 + GFF4781 0.48 +0.0 148,919 + GFF4781 0.48 -0.0 148,920 - GFF4781 0.49 +2.3 148,920 - GFF4781 0.49 -1.5 148,922 + GFF4781 0.49 -1.1 148,922 + GFF4781 0.49 -0.4 148,923 - GFF4781 0.49 -0.3 148,923 - GFF4781 0.49 -2.8 148,923 - GFF4781 0.49 -0.5 148,923 - GFF4781 0.49 -0.1 148,925 + GFF4781 0.49 -1.8 148,925 + GFF4781 0.49 -2.0 148,925 + GFF4781 0.49 +0.9 148,926 - GFF4781 0.49 -0.3 148,926 - GFF4781 0.49 -1.6 148,926 - GFF4781 0.49 +2.2 148,926 - GFF4781 0.49 +1.4 149,048 + GFF4781 0.60 +1.7 149,049 - GFF4781 0.61 -2.6 149,264 + GFF4781 0.81 -0.8 149,321 + GFF4781 0.86 -0.9 149,321 + GFF4781 0.86 +0.9 149,321 + GFF4781 0.86 +1.2 149,321 + GFF4781 0.86 -0.1 149,321 + GFF4781 0.86 +0.2 149,321 + GFF4781 0.86 +0.5 149,322 - GFF4781 0.86 -3.6 149,532 + -1.5 149,532 + -3.4 149,564 - -3.0 149,851 + GFF4782 0.35 -0.7 149,851 + GFF4782 0.35 +2.1 149,851 + GFF4782 0.35 +1.6 149,852 - GFF4782 0.36 +1.8 149,921 - GFF4782 0.42 +3.8 150,064 + GFF4782 0.55 +3.4 150,064 + GFF4782 0.55 -2.9 150,064 + GFF4782 0.55 +0.8 150,065 - GFF4782 0.55 -1.1 150,082 + GFF4782 0.57 -0.1 150,082 + GFF4782 0.57 -2.5 150,082 + GFF4782 0.57 -0.1 150,083 - GFF4782 0.57 +0.3 150,083 - GFF4782 0.57 +0.5 150,083 - GFF4782 0.57 +1.4 150,124 + GFF4782 0.61 -1.8 150,124 + GFF4782 0.61 +0.2 150,124 + GFF4782 0.61 -0.2 150,124 + GFF4782 0.61 -2.2 150,166 + GFF4782 0.65 +0.2 150,167 - GFF4782 0.65 +0.3 150,250 + GFF4782 0.73 +0.1 150,250 + GFF4782 0.73 +1.6 150,332 - GFF4782 0.80 -2.9 150,332 - GFF4782 0.80 +0.1 150,400 + GFF4782 0.86 -1.3 150,401 - GFF4782 0.87 +4.0 150,401 - GFF4782 0.87 +0.6
Or see this region's nucleotide sequence