Strain Fitness in Variovorax sp. SCN45 around GFF4722

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
82,791	+		GFF4721	0.12	-3.2
82,791	+		GFF4721	0.12	-0.8
82,791	+		GFF4721	0.12	+0.0
82,791	+		GFF4721	0.12	-0.7
82,792	-		GFF4721	0.12	-0.2
82,792	-		GFF4721	0.12	+0.3
82,792	-		GFF4721	0.12	-0.3
82,792	-		GFF4721	0.12	+0.5
83,046	+		GFF4721	0.39	-1.5
83,047	-		GFF4721	0.39	-2.7
83,047	-		GFF4721	0.39	+0.1
83,047	-		GFF4721	0.39	+0.9
83,274	+		GFF4721	0.64	-1.1
83,275	-		GFF4721	0.64	-0.4
83,343	+		GFF4721	0.72	+0.3
83,343	+		GFF4721	0.72	+2.2
83,343	+		GFF4721	0.72	-0.1
83,343	+		GFF4721	0.72	+2.9
83,343	+		GFF4721	0.72	-0.4
83,343	+		GFF4721	0.72	-0.8
83,343	+		GFF4721	0.72	-1.3
83,344	-		GFF4721	0.72	-1.7
83,344	-		GFF4721	0.72	+1.7
83,413	-		GFF4721	0.79	-2.0
83,413	-		GFF4721	0.79	-1.4
83,413	-		GFF4721	0.79	+0.1
83,445	+		GFF4721	0.83	-2.8
83,445	+		GFF4721	0.83	+1.3
83,656	+				-0.6
83,656	+				-2.7
83,656	+				+0.1
83,656	+				-0.9
83,656	+				+1.4
83,656	+				-0.8
83,656	+				-1.7
83,656	+				-0.9
83,657	-				-0.6
83,657	-				-0.5
83,657	-				+1.4
83,657	-				+0.3
83,657	-				-0.1
83,657	-				-2.4
83,713	+				-0.4
83,714	-				+1.3
83,714	-				-0.3
83,807	-		GFF4722	0.15	+0.9
83,818	+		GFF4722	0.16	-0.4
83,818	+		GFF4722	0.16	-0.4
83,819	-		GFF4722	0.16	+0.1
83,819	-		GFF4722	0.16	-1.1
83,860	+		GFF4722	0.19	+1.9
83,860	+		GFF4722	0.19	+0.8
83,860	+		GFF4722	0.19	-0.0
83,860	+		GFF4722	0.19	-1.6
83,861	-		GFF4722	0.19	-1.2
83,861	-		GFF4722	0.19	+0.6
83,861	-		GFF4722	0.19	+0.0
83,861	-		GFF4722	0.19	-0.1
83,861	-		GFF4722	0.19	-1.1
83,861	-		GFF4722	0.19	-0.8
83,863	+		GFF4722	0.19	+0.9
83,864	-		GFF4722	0.19	+1.9
83,881	+		GFF4722	0.21	-1.4
83,881	+		GFF4722	0.21	-0.5
83,923	+		GFF4722	0.24	+0.6
83,923	+		GFF4722	0.24	-1.4
83,924	-		GFF4722	0.24	-0.5
83,990	-		GFF4722	0.29	-1.1
84,215	-		GFF4722	0.47	-2.6
84,215	-		GFF4722	0.47	-0.9
84,382	+		GFF4722	0.60	+0.2
84,382	+		GFF4722	0.60	-1.8
84,382	+		GFF4722	0.60	+0.3
84,382	+		GFF4722	0.60	-0.9
84,382	+		GFF4722	0.60	-1.4
84,382	+		GFF4722	0.60	-1.5
84,383	-		GFF4722	0.60	-0.4
84,383	-		GFF4722	0.60	-1.1
84,383	-		GFF4722	0.60	-1.4
84,383	-		GFF4722	0.60	-0.1
84,383	-		GFF4722	0.60	+0.8
84,406	+		GFF4722	0.62	-1.2
84,406	+		GFF4722	0.62	+0.2
84,406	+		GFF4722	0.62	+2.4
84,406	+		GFF4722	0.62	-1.2
84,406	+		GFF4722	0.62	-0.3
84,406	+		GFF4722	0.62	-1.4
84,406	+		GFF4722	0.62	-0.4
84,406	+		GFF4722	0.62	-1.4
84,407	-		GFF4722	0.62	-1.4
84,407	-		GFF4722	0.62	-1.9
84,407	-		GFF4722	0.62	+1.7
84,407	-		GFF4722	0.62	-0.1
84,407	-		GFF4722	0.62	+0.3
84,454	+		GFF4722	0.66	+0.3
84,455	-		GFF4722	0.66	-1.4
84,688	+		GFF4722	0.84	-0.9
84,763	+				+0.3
84,763	+				-0.5
84,764	-				+1.3
85,175	+		GFF4723	0.22	-0.7
85,175	+		GFF4723	0.22	+0.7
85,175	+		GFF4723	0.22	+1.3
85,175	+		GFF4723	0.22	-0.9
85,176	-		GFF4723	0.22	-2.5
85,176	-		GFF4723	0.22	-1.1
85,176	-		GFF4723	0.22	-0.2
85,176	-		GFF4723	0.22	+1.0
85,176	-		GFF4723	0.22	+0.7
85,176	-		GFF4723	0.22	-1.2
85,176	-		GFF4723	0.22	+1.3
85,176	-		GFF4723	0.22	+0.6
85,187	+		GFF4723	0.23	-1.8
85,188	-		GFF4723	0.23	-1.7
85,188	-		GFF4723	0.23	-1.3
85,358	+		GFF4723	0.38	+2.5
85,358	+		GFF4723	0.38	-0.2
85,359	-		GFF4723	0.38	-1.0
85,359	-		GFF4723	0.38	+0.9
85,359	-		GFF4723	0.38	-0.4
85,359	-		GFF4723	0.38	+1.0
85,479	-		GFF4723	0.49	-0.4
85,598	-		GFF4723	0.59	+1.9