Strain Fitness in Variovorax sp. SCN45 around GFF4701

Experiment: Community=Locust bean gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4699 and GFF4700 overlap by 1 nucleotidesGFF4700 and GFF4701 overlap by 4 nucleotidesGFF4701 and GFF4702 overlap by 4 nucleotides GFF4699 - ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron), at 62,722 to 64,008 GFF4699 GFF4700 - Various polyols ABC transporter, permease protein 1, at 64,008 to 64,892 GFF4700 GFF4701 - Various polyols ABC transporter, permease protein 2, at 64,889 to 65,731 GFF4701 GFF4702 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 65,728 to 66,867 GFF4702 Position (kb) 64 65 66Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 63.973 kb on + strandat 63.973 kb on + strandat 64.007 kb on - strandat 64.007 kb on - strandat 64.007 kb on - strandat 64.099 kb on + strand, within GFF4700at 64.100 kb on - strand, within GFF4700at 64.182 kb on + strand, within GFF4700at 64.182 kb on + strand, within GFF4700at 64.182 kb on + strand, within GFF4700at 64.183 kb on - strand, within GFF4700at 64.183 kb on - strand, within GFF4700at 64.183 kb on - strand, within GFF4700at 64.291 kb on + strand, within GFF4700at 64.292 kb on - strand, within GFF4700at 64.292 kb on - strand, within GFF4700at 64.292 kb on - strand, within GFF4700at 64.292 kb on - strand, within GFF4700at 64.428 kb on + strand, within GFF4700at 64.429 kb on - strand, within GFF4700at 64.429 kb on - strand, within GFF4700at 64.429 kb on - strand, within GFF4700at 64.429 kb on - strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.434 kb on + strand, within GFF4700at 64.435 kb on - strand, within GFF4700at 64.435 kb on - strand, within GFF4700at 64.435 kb on - strand, within GFF4700at 64.435 kb on - strand, within GFF4700at 64.435 kb on - strand, within GFF4700at 64.623 kb on + strand, within GFF4700at 64.623 kb on + strand, within GFF4700at 64.623 kb on + strand, within GFF4700at 64.623 kb on + strand, within GFF4700at 64.623 kb on + strand, within GFF4700at 64.624 kb on - strand, within GFF4700at 64.624 kb on - strand, within GFF4700at 64.624 kb on - strand, within GFF4700at 64.624 kb on - strand, within GFF4700at 64.624 kb on - strand, within GFF4700at 64.624 kb on - strand, within GFF4700at 64.624 kb on - strand, within GFF4700at 64.624 kb on - strand, within GFF4700at 64.629 kb on + strand, within GFF4700at 64.630 kb on - strand, within GFF4700at 64.630 kb on - strand, within GFF4700at 64.630 kb on - strand, within GFF4700at 64.716 kb on + strand, within GFF4700at 64.716 kb on + strand, within GFF4700at 64.716 kb on + strand, within GFF4700at 64.716 kb on + strand, within GFF4700at 64.717 kb on - strand, within GFF4700at 64.717 kb on - strand, within GFF4700at 64.717 kb on - strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.803 kb on - strand, within GFF4700at 64.809 kb on + strandat 64.809 kb on + strandat 64.809 kb on + strandat 64.809 kb on + strandat 64.809 kb on + strandat 64.810 kb on - strandat 64.810 kb on - strandat 64.810 kb on - strandat 64.810 kb on - strandat 64.810 kb on - strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.117 kb on + strand, within GFF4701at 65.178 kb on - strand, within GFF4701at 65.303 kb on + strand, within GFF4701at 65.304 kb on - strand, within GFF4701at 65.304 kb on - strand, within GFF4701at 65.304 kb on - strand, within GFF4701at 65.304 kb on - strand, within GFF4701at 65.333 kb on + strand, within GFF4701at 65.333 kb on + strand, within GFF4701at 65.334 kb on - strand, within GFF4701at 65.373 kb on + strand, within GFF4701at 65.374 kb on - strand, within GFF4701at 65.439 kb on - strand, within GFF4701at 66.013 kb on + strand, within GFF4702at 66.013 kb on + strand, within GFF4702at 66.014 kb on - strand, within GFF4702at 66.023 kb on - strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.329 kb on - strand, within GFF4702at 66.329 kb on - strand, within GFF4702at 66.329 kb on - strand, within GFF4702at 66.329 kb on - strand, within GFF4702at 66.682 kb on + strand, within GFF4702

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
remove
63,973 + -1.8
63,973 + -0.5
64,007 - +0.5
64,007 - -2.5
64,007 - -0.5
64,099 + GFF4700 0.10 -0.7
64,100 - GFF4700 0.10 -0.8
64,182 + GFF4700 0.20 -1.5
64,182 + GFF4700 0.20 +0.3
64,182 + GFF4700 0.20 -1.5
64,183 - GFF4700 0.20 -2.5
64,183 - GFF4700 0.20 -0.4
64,183 - GFF4700 0.20 -0.4
64,291 + GFF4700 0.32 -2.0
64,292 - GFF4700 0.32 +0.7
64,292 - GFF4700 0.32 -0.4
64,292 - GFF4700 0.32 -1.3
64,292 - GFF4700 0.32 -0.7
64,428 + GFF4700 0.47 -2.4
64,429 - GFF4700 0.48 -0.5
64,429 - GFF4700 0.48 +2.5
64,429 - GFF4700 0.48 -1.1
64,429 - GFF4700 0.48 -1.8
64,434 + GFF4700 0.48 -0.4
64,434 + GFF4700 0.48 +0.3
64,434 + GFF4700 0.48 -1.2
64,434 + GFF4700 0.48 -1.8
64,434 + GFF4700 0.48 -0.7
64,434 + GFF4700 0.48 -0.7
64,434 + GFF4700 0.48 -0.1
64,434 + GFF4700 0.48 -1.9
64,434 + GFF4700 0.48 +0.3
64,434 + GFF4700 0.48 +0.6
64,435 - GFF4700 0.48 -1.9
64,435 - GFF4700 0.48 -0.9
64,435 - GFF4700 0.48 +3.3
64,435 - GFF4700 0.48 -0.7
64,435 - GFF4700 0.48 -0.7
64,623 + GFF4700 0.69 -3.1
64,623 + GFF4700 0.69 +0.1
64,623 + GFF4700 0.69 -0.6
64,623 + GFF4700 0.69 +1.9
64,623 + GFF4700 0.69 -0.7
64,624 - GFF4700 0.70 +1.3
64,624 - GFF4700 0.70 +0.9
64,624 - GFF4700 0.70 +0.2
64,624 - GFF4700 0.70 -2.5
64,624 - GFF4700 0.70 +1.2
64,624 - GFF4700 0.70 +0.7
64,624 - GFF4700 0.70 +1.9
64,624 - GFF4700 0.70 -3.3
64,629 + GFF4700 0.70 -0.2
64,630 - GFF4700 0.70 -1.9
64,630 - GFF4700 0.70 -0.3
64,630 - GFF4700 0.70 -1.2
64,716 + GFF4700 0.80 -1.4
64,716 + GFF4700 0.80 +1.2
64,716 + GFF4700 0.80 -1.1
64,716 + GFF4700 0.80 -0.3
64,717 - GFF4700 0.80 -0.5
64,717 - GFF4700 0.80 -1.9
64,717 - GFF4700 0.80 -0.0
64,767 + GFF4700 0.86 -0.4
64,767 + GFF4700 0.86 -0.5
64,767 + GFF4700 0.86 -0.9
64,767 + GFF4700 0.86 -1.9
64,767 + GFF4700 0.86 -1.2
64,767 + GFF4700 0.86 -0.1
64,767 + GFF4700 0.86 -1.4
64,767 + GFF4700 0.86 -0.8
64,767 + GFF4700 0.86 -1.1
64,767 + GFF4700 0.86 -1.5
64,767 + GFF4700 0.86 -0.7
64,767 + GFF4700 0.86 -0.5
64,767 + GFF4700 0.86 +0.2
64,768 - GFF4700 0.86 -2.2
64,768 - GFF4700 0.86 -1.1
64,768 - GFF4700 0.86 -0.4
64,768 - GFF4700 0.86 -1.7
64,768 - GFF4700 0.86 -0.1
64,768 - GFF4700 0.86 -0.2
64,768 - GFF4700 0.86 +0.3
64,768 - GFF4700 0.86 +0.1
64,768 - GFF4700 0.86 -0.9
64,768 - GFF4700 0.86 -0.1
64,768 - GFF4700 0.86 -2.7
64,803 - GFF4700 0.90 -0.2
64,809 + -1.1
64,809 + -0.1
64,809 + +1.9
64,809 + +0.7
64,809 + +0.5
64,810 - +0.1
64,810 - +0.3
64,810 - -1.4
64,810 - -1.3
64,810 - -1.4
64,863 + -1.2
64,863 + +0.7
64,863 + -1.2
64,863 + +0.5
64,863 + +0.1
64,863 + +1.0
64,863 + +0.3
64,863 + +0.2
64,863 + +0.9
64,864 - -1.1
64,864 - -2.7
64,864 - +1.2
64,864 - -2.1
64,864 - -2.0
64,864 - -1.5
64,864 - -0.4
64,864 - -1.8
64,864 - +0.5
64,864 - +1.7
65,069 + GFF4701 0.21 -0.1
65,069 + GFF4701 0.21 -1.9
65,069 + GFF4701 0.21 +0.3
65,069 + GFF4701 0.21 -1.6
65,069 + GFF4701 0.21 +2.7
65,069 + GFF4701 0.21 -1.6
65,069 + GFF4701 0.21 -1.5
65,069 + GFF4701 0.21 -2.2
65,069 + GFF4701 0.21 +0.9
65,069 + GFF4701 0.21 +0.7
65,069 + GFF4701 0.21 +1.8
65,070 - GFF4701 0.21 -3.8
65,070 - GFF4701 0.21 +0.7
65,070 - GFF4701 0.21 -0.3
65,070 - GFF4701 0.21 -1.0
65,070 - GFF4701 0.21 -0.7
65,070 - GFF4701 0.21 +0.3
65,070 - GFF4701 0.21 +1.2
65,070 - GFF4701 0.21 -1.2
65,070 - GFF4701 0.21 +0.9
65,075 + GFF4701 0.22 -0.7
65,075 + GFF4701 0.22 -2.2
65,075 + GFF4701 0.22 +1.2
65,075 + GFF4701 0.22 -0.1
65,075 + GFF4701 0.22 -3.1
65,075 + GFF4701 0.22 -3.0
65,075 + GFF4701 0.22 +0.3
65,075 + GFF4701 0.22 +0.3
65,075 + GFF4701 0.22 +0.6
65,075 + GFF4701 0.22 -3.2
65,075 + GFF4701 0.22 -0.9
65,076 - GFF4701 0.22 -3.3
65,076 - GFF4701 0.22 +1.4
65,076 - GFF4701 0.22 -0.9
65,076 - GFF4701 0.22 -0.4
65,076 - GFF4701 0.22 -0.6
65,076 - GFF4701 0.22 -3.1
65,076 - GFF4701 0.22 +1.2
65,076 - GFF4701 0.22 -0.8
65,076 - GFF4701 0.22 +1.7
65,117 + GFF4701 0.27 -2.1
65,178 - GFF4701 0.34 -0.7
65,303 + GFF4701 0.49 -1.6
65,304 - GFF4701 0.49 -0.7
65,304 - GFF4701 0.49 -1.4
65,304 - GFF4701 0.49 -0.6
65,304 - GFF4701 0.49 +2.7
65,333 + GFF4701 0.53 -2.2
65,333 + GFF4701 0.53 -1.4
65,334 - GFF4701 0.53 -0.1
65,373 + GFF4701 0.57 -0.4
65,374 - GFF4701 0.58 -3.5
65,439 - GFF4701 0.65 -1.7
66,013 + GFF4702 0.25 +0.0
66,013 + GFF4702 0.25 +0.3
66,014 - GFF4702 0.25 +0.5
66,023 - GFF4702 0.26 -1.8
66,328 + GFF4702 0.53 +1.3
66,328 + GFF4702 0.53 -1.5
66,328 + GFF4702 0.53 +1.3
66,328 + GFF4702 0.53 +1.1
66,328 + GFF4702 0.53 -0.7
66,328 + GFF4702 0.53 -0.8
66,328 + GFF4702 0.53 +0.0
66,329 - GFF4702 0.53 -1.7
66,329 - GFF4702 0.53 -1.1
66,329 - GFF4702 0.53 -1.8
66,329 - GFF4702 0.53 -0.5
66,682 + GFF4702 0.84 +0.3

Or see this region's nucleotide sequence