Strain Fitness in Variovorax sp. SCN45 around GFF4689

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4688 and GFF4689 are separated by 18 nucleotidesGFF4689 and GFF4690 are separated by 10 nucleotides GFF4688 - Cobalt/zinc/cadmium efflux RND transporter, outer membrane protein CzcC, at 47,992 to 49,356 GFF4688 GFF4689 - Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein CzcB, at 49,375 to 50,763 GFF4689 GFF4690 - Cobalt/zinc/cadmium efflux RND transporter, transmembrane protein CzcA, at 50,774 to 53,986 GFF4690 Position (kb) 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 49.150 kb on + strand, within GFF4688at 49.150 kb on + strand, within GFF4688at 49.151 kb on - strand, within GFF4688at 49.151 kb on - strand, within GFF4688at 49.151 kb on - strand, within GFF4688at 49.361 kb on + strandat 49.780 kb on - strand, within GFF4689at 49.843 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.032 kb on + strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.033 kb on - strand, within GFF4689at 50.036 kb on + strand, within GFF4689at 50.036 kb on + strand, within GFF4689at 50.037 kb on - strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.083 kb on + strand, within GFF4689at 50.084 kb on - strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.410 kb on + strand, within GFF4689at 50.411 kb on - strand, within GFF4689at 50.411 kb on - strand, within GFF4689at 50.695 kb on + strandat 50.695 kb on + strandat 50.696 kb on - strandat 50.865 kb on - strandat 50.897 kb on - strandat 51.035 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.083 kb on + strandat 51.084 kb on - strandat 51.084 kb on - strandat 51.084 kb on - strandat 51.084 kb on - strandat 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.191 kb on + strand, within GFF4690at 51.192 kb on - strand, within GFF4690at 51.192 kb on - strand, within GFF4690at 51.192 kb on - strand, within GFF4690at 51.192 kb on - strand, within GFF4690at 51.246 kb on - strand, within GFF4690at 51.342 kb on - strand, within GFF4690at 51.360 kb on + strand, within GFF4690at 51.456 kb on - strand, within GFF4690at 51.456 kb on - strand, within GFF4690at 51.479 kb on + strand, within GFF4690at 51.479 kb on + strand, within GFF4690at 51.479 kb on + strand, within GFF4690at 51.479 kb on + strand, within GFF4690at 51.480 kb on - strand, within GFF4690at 51.480 kb on - strand, within GFF4690at 51.480 kb on - strand, within GFF4690at 51.480 kb on - strand, within GFF4690at 51.480 kb on - strand, within GFF4690at 51.761 kb on + strand, within GFF4690at 51.761 kb on + strand, within GFF4690

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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49,150 + GFF4688 0.85 -0.9
49,150 + GFF4688 0.85 -1.7
49,151 - GFF4688 0.85 +1.5
49,151 - GFF4688 0.85 -1.3
49,151 - GFF4688 0.85 +0.7
49,361 + +0.3
49,780 - GFF4689 0.29 -0.9
49,843 + GFF4689 0.34 -0.7
50,032 + GFF4689 0.47 -0.8
50,032 + GFF4689 0.47 +0.3
50,032 + GFF4689 0.47 -0.5
50,032 + GFF4689 0.47 -1.5
50,032 + GFF4689 0.47 -1.7
50,032 + GFF4689 0.47 -1.8
50,032 + GFF4689 0.47 -0.7
50,032 + GFF4689 0.47 -1.1
50,032 + GFF4689 0.47 -1.8
50,033 - GFF4689 0.47 +0.7
50,033 - GFF4689 0.47 -0.7
50,033 - GFF4689 0.47 +1.3
50,033 - GFF4689 0.47 -0.4
50,033 - GFF4689 0.47 -3.1
50,033 - GFF4689 0.47 -0.2
50,033 - GFF4689 0.47 -0.3
50,033 - GFF4689 0.47 -2.0
50,033 - GFF4689 0.47 -0.3
50,033 - GFF4689 0.47 -1.1
50,033 - GFF4689 0.47 +1.3
50,036 + GFF4689 0.48 -0.4
50,036 + GFF4689 0.48 +0.6
50,037 - GFF4689 0.48 -1.2
50,083 + GFF4689 0.51 -0.7
50,083 + GFF4689 0.51 +0.3
50,083 + GFF4689 0.51 -0.8
50,083 + GFF4689 0.51 -2.1
50,083 + GFF4689 0.51 +0.1
50,083 + GFF4689 0.51 +0.5
50,084 - GFF4689 0.51 +0.2
50,410 + GFF4689 0.75 +0.3
50,410 + GFF4689 0.75 +3.7
50,410 + GFF4689 0.75 +0.3
50,410 + GFF4689 0.75 +0.6
50,410 + GFF4689 0.75 -2.2
50,410 + GFF4689 0.75 -2.0
50,411 - GFF4689 0.75 -0.5
50,411 - GFF4689 0.75 -1.4
50,695 + +0.7
50,695 + -2.5
50,696 - -3.5
50,865 - -1.7
50,897 - +0.3
51,035 + -0.1
51,083 + +0.2
51,083 + -0.9
51,083 + -1.1
51,083 + -1.0
51,083 + +0.3
51,083 + -3.1
51,083 + +1.1
51,083 + -2.9
51,083 + +0.1
51,083 + +1.3
51,084 - -1.8
51,084 - -1.4
51,084 - -3.0
51,084 - -0.1
51,191 + GFF4690 0.13 +0.2
51,191 + GFF4690 0.13 +0.9
51,191 + GFF4690 0.13 -0.7
51,191 + GFF4690 0.13 +1.2
51,191 + GFF4690 0.13 +1.2
51,191 + GFF4690 0.13 -1.0
51,191 + GFF4690 0.13 +0.3
51,192 - GFF4690 0.13 -0.2
51,192 - GFF4690 0.13 -2.2
51,192 - GFF4690 0.13 -2.2
51,192 - GFF4690 0.13 +1.1
51,246 - GFF4690 0.15 -0.5
51,342 - GFF4690 0.18 +0.4
51,360 + GFF4690 0.18 +0.1
51,456 - GFF4690 0.21 +0.5
51,456 - GFF4690 0.21 -2.2
51,479 + GFF4690 0.22 +0.3
51,479 + GFF4690 0.22 +0.4
51,479 + GFF4690 0.22 +0.7
51,479 + GFF4690 0.22 -3.2
51,480 - GFF4690 0.22 +1.3
51,480 - GFF4690 0.22 -0.4
51,480 - GFF4690 0.22 -1.1
51,480 - GFF4690 0.22 +0.7
51,480 - GFF4690 0.22 -0.4
51,761 + GFF4690 0.31 -0.2
51,761 + GFF4690 0.31 -3.5

Or see this region's nucleotide sequence