Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4657 and GFF4658 are separated by 1 nucleotides GFF4658 and GFF4659 are separated by 9 nucleotides GFF4659 and GFF4660 are separated by 0 nucleotides GFF4660 and GFF4661 overlap by 32 nucleotides
GFF4657 - hypothetical protein, at 16,045 to 17,043
GFF4657
GFF4658 - KEGG: RNA polymerase sigma-70 factor, ECF subfamily, at 17,045 to 17,557
GFF4658
GFF4659 - no description, at 17,567 to 17,686
GFF4659
GFF4660 - hypothetical protein, at 17,687 to 18,610
GFF4660
GFF4661 - no description, at 18,579 to 19,871
GFF4661
Position (kb) 17
18
19 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.073 kb on + strand at 17.074 kb on - strand at 17.074 kb on - strand at 17.074 kb on - strand at 17.074 kb on - strand at 17.074 kb on - strand at 17.074 kb on - strand at 17.074 kb on - strand at 17.074 kb on - strand at 17.100 kb on + strand, within GFF4658 at 17.100 kb on + strand, within GFF4658 at 17.100 kb on + strand, within GFF4658 at 17.101 kb on - strand, within GFF4658 at 17.116 kb on + strand, within GFF4658 at 17.116 kb on + strand, within GFF4658 at 17.117 kb on - strand, within GFF4658 at 17.117 kb on - strand, within GFF4658 at 17.117 kb on - strand, within GFF4658 at 17.117 kb on - strand, within GFF4658 at 17.117 kb on - strand, within GFF4658 at 17.256 kb on + strand, within GFF4658 at 17.256 kb on + strand, within GFF4658 at 17.256 kb on + strand, within GFF4658 at 17.256 kb on + strand, within GFF4658 at 17.257 kb on - strand, within GFF4658 at 17.257 kb on - strand, within GFF4658 at 17.346 kb on + strand, within GFF4658 at 17.346 kb on + strand, within GFF4658 at 17.346 kb on + strand, within GFF4658 at 17.347 kb on - strand, within GFF4658 at 17.347 kb on - strand, within GFF4658 at 17.347 kb on - strand, within GFF4658 at 17.347 kb on - strand, within GFF4658 at 17.347 kb on - strand, within GFF4658 at 17.377 kb on - strand, within GFF4658 at 17.649 kb on + strand, within GFF4659 at 17.649 kb on + strand, within GFF4659 at 17.649 kb on + strand, within GFF4659 at 17.649 kb on + strand, within GFF4659 at 17.649 kb on + strand, within GFF4659 at 17.650 kb on - strand, within GFF4659 at 17.650 kb on - strand, within GFF4659 at 17.650 kb on - strand, within GFF4659 at 17.650 kb on - strand, within GFF4659 at 17.712 kb on + strand at 17.713 kb on - strand at 17.900 kb on + strand, within GFF4660 at 17.900 kb on + strand, within GFF4660 at 17.900 kb on + strand, within GFF4660 at 17.901 kb on - strand, within GFF4660 at 17.901 kb on - strand, within GFF4660 at 17.901 kb on - strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 18.002 kb on + strand, within GFF4660 at 18.002 kb on + strand, within GFF4660 at 18.002 kb on + strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.320 kb on + strand, within GFF4660 at 18.320 kb on + strand, within GFF4660 at 18.320 kb on + strand, within GFF4660 at 18.320 kb on + strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.350 kb on + strand, within GFF4660 at 18.350 kb on + strand, within GFF4660 at 18.350 kb on + strand, within GFF4660 at 18.351 kb on - strand, within GFF4660 at 18.351 kb on - strand, within GFF4660 at 18.563 kb on + strand at 18.563 kb on + strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.678 kb on + strand at 18.975 kb on + strand, within GFF4661 at 18.975 kb on + strand, within GFF4661 at 18.975 kb on + strand, within GFF4661 at 18.975 kb on + strand, within GFF4661 at 18.975 kb on + strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.010 kb on - strand, within GFF4661 at 19.010 kb on - strand, within GFF4661 at 19.010 kb on - strand, within GFF4661 at 19.055 kb on + strand, within GFF4661 at 19.138 kb on + strand, within GFF4661 at 19.138 kb on + strand, within GFF4661 at 19.138 kb on + strand, within GFF4661 at 19.138 kb on + strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.153 kb on + strand, within GFF4661 at 19.153 kb on + strand, within GFF4661 at 19.153 kb on + strand, within GFF4661 at 19.154 kb on - strand, within GFF4661 at 19.154 kb on - strand, within GFF4661 at 19.164 kb on + strand, within GFF4661 at 19.164 kb on + strand, within GFF4661 at 19.164 kb on + strand, within GFF4661 at 19.164 kb on + strand, within GFF4661 at 19.165 kb on - strand, within GFF4661 at 19.165 kb on - strand, within GFF4661 at 19.165 kb on - strand, within GFF4661 at 19.304 kb on + strand, within GFF4661 at 19.305 kb on - strand, within GFF4661 at 19.305 kb on - strand, within GFF4661 at 19.305 kb on - strand, within GFF4661 at 19.325 kb on - strand, within GFF4661 at 19.325 kb on - strand, within GFF4661 at 19.325 kb on - strand, within GFF4661 at 19.470 kb on + strand, within GFF4661 at 19.470 kb on + strand, within GFF4661 at 19.470 kb on + strand, within GFF4661 at 19.470 kb on + strand, within GFF4661 at 19.471 kb on - strand, within GFF4661 at 19.471 kb on - strand, within GFF4661 at 19.471 kb on - strand, within GFF4661 at 19.471 kb on - strand, within GFF4661 at 19.506 kb on + strand, within GFF4661 at 19.506 kb on + strand, within GFF4661 at 19.506 kb on + strand, within GFF4661 at 19.506 kb on + strand, within GFF4661
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 17,073 + -3.0 17,073 + -1.7 17,073 + -0.1 17,073 + -2.2 17,073 + -1.0 17,073 + -1.7 17,073 + +1.5 17,073 + -1.5 17,073 + +0.8 17,073 + -2.3 17,073 + +0.3 17,073 + +0.3 17,074 - +1.6 17,074 - -3.8 17,074 - +0.1 17,074 - -2.1 17,074 - -3.8 17,074 - -1.7 17,074 - +0.2 17,074 - +0.2 17,100 + GFF4658 0.11 -0.5 17,100 + GFF4658 0.11 -1.3 17,100 + GFF4658 0.11 -1.4 17,101 - GFF4658 0.11 +0.1 17,116 + GFF4658 0.14 +0.1 17,116 + GFF4658 0.14 +0.3 17,117 - GFF4658 0.14 +0.3 17,117 - GFF4658 0.14 +0.4 17,117 - GFF4658 0.14 +1.8 17,117 - GFF4658 0.14 -0.4 17,117 - GFF4658 0.14 +0.6 17,256 + GFF4658 0.41 -1.5 17,256 + GFF4658 0.41 -1.2 17,256 + GFF4658 0.41 -1.4 17,256 + GFF4658 0.41 -0.5 17,257 - GFF4658 0.41 -1.5 17,257 - GFF4658 0.41 -0.1 17,346 + GFF4658 0.59 -1.2 17,346 + GFF4658 0.59 +1.6 17,346 + GFF4658 0.59 +1.4 17,347 - GFF4658 0.59 +0.9 17,347 - GFF4658 0.59 +1.4 17,347 - GFF4658 0.59 -1.7 17,347 - GFF4658 0.59 -1.1 17,347 - GFF4658 0.59 +0.8 17,377 - GFF4658 0.65 -2.5 17,649 + GFF4659 0.68 -1.1 17,649 + GFF4659 0.68 -2.0 17,649 + GFF4659 0.68 +0.8 17,649 + GFF4659 0.68 +1.0 17,649 + GFF4659 0.68 +0.5 17,650 - GFF4659 0.69 -0.6 17,650 - GFF4659 0.69 -1.4 17,650 - GFF4659 0.69 -0.2 17,650 - GFF4659 0.69 -1.5 17,712 + -0.5 17,713 - +0.6 17,900 + GFF4660 0.23 -0.7 17,900 + GFF4660 0.23 -1.2 17,900 + GFF4660 0.23 +0.7 17,901 - GFF4660 0.23 -0.4 17,901 - GFF4660 0.23 -2.3 17,901 - GFF4660 0.23 -0.7 17,961 + GFF4660 0.30 -0.3 17,961 + GFF4660 0.30 -1.3 17,961 + GFF4660 0.30 -0.1 17,961 + GFF4660 0.30 -2.0 17,961 + GFF4660 0.30 +0.9 17,961 + GFF4660 0.30 +1.9 17,961 + GFF4660 0.30 -2.3 17,961 + GFF4660 0.30 -2.1 17,962 - GFF4660 0.30 -2.6 17,962 - GFF4660 0.30 -2.2 17,962 - GFF4660 0.30 +0.5 17,962 - GFF4660 0.30 -0.5 17,962 - GFF4660 0.30 -0.4 17,962 - GFF4660 0.30 +0.7 17,962 - GFF4660 0.30 +0.1 18,002 + GFF4660 0.34 -2.4 18,002 + GFF4660 0.34 +0.3 18,002 + GFF4660 0.34 -1.5 18,003 - GFF4660 0.34 -0.1 18,003 - GFF4660 0.34 -1.8 18,003 - GFF4660 0.34 -0.1 18,003 - GFF4660 0.34 -0.9 18,003 - GFF4660 0.34 -3.0 18,003 - GFF4660 0.34 +0.8 18,320 + GFF4660 0.69 -1.2 18,320 + GFF4660 0.69 -1.3 18,320 + GFF4660 0.69 -1.8 18,320 + GFF4660 0.69 -2.5 18,321 - GFF4660 0.69 -3.3 18,321 - GFF4660 0.69 +0.6 18,321 - GFF4660 0.69 -0.7 18,321 - GFF4660 0.69 -3.1 18,321 - GFF4660 0.69 +0.9 18,350 + GFF4660 0.72 -1.9 18,350 + GFF4660 0.72 -1.9 18,350 + GFF4660 0.72 +1.4 18,351 - GFF4660 0.72 -1.2 18,351 - GFF4660 0.72 -0.7 18,563 + -1.3 18,563 + -0.4 18,564 - -4.2 18,564 - +0.2 18,564 - -0.1 18,564 - -2.2 18,564 - -0.7 18,564 - -1.7 18,564 - -0.0 18,564 - +0.4 18,564 - +0.3 18,564 - -3.9 18,564 - +1.7 18,678 + -0.7 18,975 + GFF4661 0.31 +1.7 18,975 + GFF4661 0.31 -0.4 18,975 + GFF4661 0.31 +0.4 18,975 + GFF4661 0.31 -0.1 18,975 + GFF4661 0.31 +0.5 18,976 - GFF4661 0.31 -2.6 18,976 - GFF4661 0.31 -1.7 18,976 - GFF4661 0.31 -0.9 18,976 - GFF4661 0.31 -1.7 18,976 - GFF4661 0.31 -1.8 19,009 + GFF4661 0.33 -0.7 19,009 + GFF4661 0.33 -1.6 19,009 + GFF4661 0.33 -0.3 19,009 + GFF4661 0.33 +0.3 19,009 + GFF4661 0.33 -0.1 19,010 - GFF4661 0.33 +1.1 19,010 - GFF4661 0.33 +0.6 19,010 - GFF4661 0.33 +0.9 19,055 + GFF4661 0.37 -2.2 19,138 + GFF4661 0.43 -0.5 19,138 + GFF4661 0.43 -0.1 19,138 + GFF4661 0.43 +0.6 19,138 + GFF4661 0.43 -0.9 19,139 - GFF4661 0.43 -0.7 19,139 - GFF4661 0.43 -0.3 19,139 - GFF4661 0.43 -0.7 19,139 - GFF4661 0.43 +1.4 19,139 - GFF4661 0.43 -0.3 19,153 + GFF4661 0.44 -0.3 19,153 + GFF4661 0.44 -0.7 19,153 + GFF4661 0.44 -1.2 19,154 - GFF4661 0.44 -1.7 19,154 - GFF4661 0.44 -1.7 19,164 + GFF4661 0.45 +0.5 19,164 + GFF4661 0.45 +0.7 19,164 + GFF4661 0.45 -2.5 19,164 + GFF4661 0.45 +0.6 19,165 - GFF4661 0.45 -0.1 19,165 - GFF4661 0.45 -1.5 19,165 - GFF4661 0.45 +0.4 19,304 + GFF4661 0.56 +0.6 19,305 - GFF4661 0.56 -0.3 19,305 - GFF4661 0.56 -1.5 19,305 - GFF4661 0.56 +0.6 19,325 - GFF4661 0.58 -0.1 19,325 - GFF4661 0.58 -0.4 19,325 - GFF4661 0.58 -2.8 19,470 + GFF4661 0.69 +1.3 19,470 + GFF4661 0.69 -1.5 19,470 + GFF4661 0.69 +2.9 19,470 + GFF4661 0.69 -1.7 19,471 - GFF4661 0.69 -1.8 19,471 - GFF4661 0.69 -1.9 19,471 - GFF4661 0.69 +1.7 19,471 - GFF4661 0.69 -0.4 19,506 + GFF4661 0.72 -1.5 19,506 + GFF4661 0.72 -1.3 19,506 + GFF4661 0.72 +1.0 19,506 + GFF4661 0.72 +0.2
Or see this region's nucleotide sequence