Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4537 and GFF4538 are separated by 0 nucleotides GFF4538 and GFF4539 are separated by 21 nucleotides GFF4539 and GFF4540 are separated by 375 nucleotides
GFF4537 - Tetrapartite efflux system, inner membrane component FusBC-like, at 175,084 to 177,216
GFF4537
GFF4538 - Transcriptional regulator, MarR family, at 177,217 to 177,684
GFF4538
GFF4539 - no description, at 177,706 to 177,831
GFF4539
GFF4540 - hypothetical protein, at 178,207 to 179,388
GFF4540
Position (kb) 177
178 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 176.858 kb on + strand, within GFF4537 at 176.858 kb on + strand, within GFF4537 at 176.859 kb on - strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on - strand, within GFF4537 at 176.880 kb on - strand, within GFF4537 at 176.880 kb on - strand, within GFF4537 at 176.880 kb on - strand, within GFF4537 at 176.880 kb on - strand, within GFF4537 at 177.029 kb on + strand at 177.029 kb on + strand at 177.029 kb on + strand at 177.029 kb on + strand at 177.030 kb on - strand at 177.030 kb on - strand at 177.030 kb on - strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.587 kb on + strand, within GFF4538 at 177.588 kb on - strand, within GFF4538 at 177.743 kb on + strand, within GFF4539 at 177.747 kb on + strand, within GFF4539 at 177.747 kb on + strand, within GFF4539 at 177.747 kb on + strand, within GFF4539 at 177.771 kb on - strand, within GFF4539 at 177.771 kb on - strand, within GFF4539 at 177.771 kb on - strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 178.347 kb on + strand, within GFF4540 at 178.347 kb on + strand, within GFF4540 at 178.347 kb on + strand, within GFF4540 at 178.347 kb on + strand, within GFF4540 at 178.347 kb on + strand, within GFF4540 at 178.347 kb on + strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.348 kb on - strand, within GFF4540 at 178.370 kb on + strand, within GFF4540 at 178.370 kb on + strand, within GFF4540 at 178.370 kb on + strand, within GFF4540 at 178.370 kb on + strand, within GFF4540 at 178.371 kb on - strand, within GFF4540 at 178.371 kb on - strand, within GFF4540 at 178.371 kb on - strand, within GFF4540 at 178.371 kb on - strand, within GFF4540 at 178.504 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.799 kb on + strand, within GFF4540 at 178.800 kb on - strand, within GFF4540 at 178.800 kb on - strand, within GFF4540 at 178.800 kb on - strand, within GFF4540 at 178.800 kb on - strand, within GFF4540
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 176,858 + GFF4537 0.83 -0.0 176,858 + GFF4537 0.83 -0.2 176,859 - GFF4537 0.83 -1.5 176,879 + GFF4537 0.84 +1.3 176,879 + GFF4537 0.84 +0.2 176,879 + GFF4537 0.84 -1.0 176,879 + GFF4537 0.84 -0.7 176,879 + GFF4537 0.84 -1.7 176,879 + GFF4537 0.84 +1.2 176,879 + GFF4537 0.84 -0.2 176,879 + GFF4537 0.84 -0.7 176,879 - GFF4537 0.84 +0.2 176,880 - GFF4537 0.84 -1.4 176,880 - GFF4537 0.84 +0.8 176,880 - GFF4537 0.84 +0.8 176,880 - GFF4537 0.84 +0.4 177,029 + -2.5 177,029 + +1.2 177,029 + -0.6 177,029 + -0.2 177,030 - -0.7 177,030 - -2.4 177,030 - +1.0 177,077 + -1.6 177,077 + -1.0 177,077 + +0.5 177,077 + +0.2 177,077 + -0.7 177,077 + +4.7 177,077 + -1.0 177,077 + -0.9 177,077 + -0.2 177,077 + -2.6 177,077 + -2.9 177,077 + -2.1 177,077 + -1.9 177,077 + +0.8 177,077 + +0.0 177,077 + -0.5 177,077 + -1.7 177,077 + -0.2 177,077 + +1.0 177,077 + +0.8 177,077 + -1.5 177,077 + -0.6 177,077 + -2.1 177,077 + +1.3 177,077 + +0.0 177,077 + +0.4 177,077 + -0.2 177,077 + +1.5 177,077 + +0.5 177,078 - +2.2 177,078 - +0.8 177,078 - +0.3 177,078 - -1.5 177,078 - -1.5 177,078 - -2.7 177,078 - +0.0 177,078 - -0.1 177,078 - +0.1 177,078 - -0.5 177,078 - +0.0 177,078 - -2.9 177,078 - +2.5 177,078 - -0.2 177,078 - +1.2 177,078 - -2.4 177,078 - +0.0 177,078 - +0.4 177,078 - -1.4 177,078 - -1.9 177,078 - -2.2 177,078 - -1.5 177,078 - +0.3 177,078 - -0.4 177,078 - -0.7 177,078 - -2.9 177,078 - +0.9 177,131 + -1.6 177,131 + -0.7 177,131 + +0.1 177,131 + -2.4 177,131 + -0.4 177,131 + -4.1 177,131 + +0.9 177,131 + +0.1 177,131 + -0.0 177,131 + +0.8 177,131 + +0.8 177,131 + +1.3 177,131 + -0.1 177,131 + +0.6 177,131 + -0.3 177,131 + -0.5 177,131 + +0.1 177,131 + +0.0 177,132 - -3.3 177,132 - +1.1 177,132 - -1.3 177,132 - -1.0 177,132 - -1.0 177,132 - -1.8 177,132 - +0.0 177,132 - -2.5 177,132 - -1.5 177,132 - +2.3 177,132 - +0.2 177,132 - -1.1 177,132 - +0.4 177,132 - +0.1 177,132 - +0.7 177,132 - -0.5 177,132 - -0.5 177,132 - -0.8 177,132 - +0.8 177,132 - -1.1 177,218 + +0.1 177,218 + -1.0 177,218 + +0.0 177,218 + +0.9 177,218 + -0.2 177,218 + -1.1 177,218 + +0.3 177,218 + +0.9 177,219 - -0.2 177,219 - +0.8 177,219 - +0.1 177,219 - -1.5 177,219 - +0.5 177,219 - +0.4 177,219 - -2.2 177,219 - -0.7 177,219 - -2.1 177,219 - -3.0 177,219 - -0.5 177,219 - -0.3 177,587 + GFF4538 0.79 -1.5 177,588 - GFF4538 0.79 -1.1 177,743 + GFF4539 0.29 -0.1 177,747 + GFF4539 0.33 -0.5 177,747 + GFF4539 0.33 -0.6 177,747 + GFF4539 0.33 -2.7 177,771 - GFF4539 0.52 -1.0 177,771 - GFF4539 0.52 -1.3 177,771 - GFF4539 0.52 -0.5 177,774 + GFF4539 0.54 -0.4 177,774 + GFF4539 0.54 -0.7 177,774 + GFF4539 0.54 -0.6 177,774 + GFF4539 0.54 +0.9 177,774 + GFF4539 0.54 -1.4 177,774 + GFF4539 0.54 -2.1 177,774 + GFF4539 0.54 -0.1 177,774 + GFF4539 0.54 -2.3 177,775 - GFF4539 0.55 +0.6 177,775 - GFF4539 0.55 -0.8 177,775 - GFF4539 0.55 +1.0 177,775 - GFF4539 0.55 -1.1 177,775 - GFF4539 0.55 -0.3 177,775 - GFF4539 0.55 -1.4 177,775 - GFF4539 0.55 -0.2 177,775 - GFF4539 0.55 -0.5 178,347 + GFF4540 0.12 -0.8 178,347 + GFF4540 0.12 -0.0 178,347 + GFF4540 0.12 -1.7 178,347 + GFF4540 0.12 +1.3 178,347 + GFF4540 0.12 +0.5 178,347 + GFF4540 0.12 -0.1 178,348 - GFF4540 0.12 -0.1 178,348 - GFF4540 0.12 -3.4 178,348 - GFF4540 0.12 +0.1 178,348 - GFF4540 0.12 -0.1 178,348 - GFF4540 0.12 +1.3 178,348 - GFF4540 0.12 +0.2 178,348 - GFF4540 0.12 +0.3 178,348 - GFF4540 0.12 +0.5 178,348 - GFF4540 0.12 -0.2 178,370 + GFF4540 0.14 +1.3 178,370 + GFF4540 0.14 +3.8 178,370 + GFF4540 0.14 +0.3 178,370 + GFF4540 0.14 +0.3 178,371 - GFF4540 0.14 -1.1 178,371 - GFF4540 0.14 +1.6 178,371 - GFF4540 0.14 +2.3 178,371 - GFF4540 0.14 -2.6 178,504 + GFF4540 0.25 +0.3 178,799 + GFF4540 0.50 +1.3 178,799 + GFF4540 0.50 +2.1 178,799 + GFF4540 0.50 -0.5 178,799 + GFF4540 0.50 -1.2 178,799 + GFF4540 0.50 -1.4 178,799 + GFF4540 0.50 +2.3 178,800 - GFF4540 0.50 +0.8 178,800 - GFF4540 0.50 -1.2 178,800 - GFF4540 0.50 -2.2 178,800 - GFF4540 0.50 -2.1
Or see this region's nucleotide sequence