Strain Fitness in Variovorax sp. SCN45 around GFF4534

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4533 and GFF4534 overlap by 4 nucleotidesGFF4534 and GFF4535 overlap by 4 nucleotidesGFF4535 and GFF4536 are separated by 18 nucleotides GFF4533 - Multidrug resistance transporter, Bcr/CflA family, at 171,223 to 172,452 GFF4533 GFF4534 - Tetrapartite efflux system, outer membrane factor lipoprotein FusA-like, at 172,449 to 173,927 GFF4534 GFF4535 - Tetrapartite efflux system, membrane fusion component FusE-like, at 173,924 to 174,862 GFF4535 GFF4536 - Tetrapartite efflux system component, FusD-like, at 174,881 to 175,087 GFF4536 Position (kb) 172 173 174Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 171.683 kb on + strand, within GFF4533at 171.683 kb on + strand, within GFF4533at 171.683 kb on + strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.827 kb on + strand, within GFF4533at 171.827 kb on + strand, within GFF4533at 171.828 kb on - strand, within GFF4533at 171.935 kb on + strand, within GFF4533at 171.935 kb on + strand, within GFF4533at 171.936 kb on - strand, within GFF4533at 171.936 kb on - strand, within GFF4533at 171.936 kb on - strand, within GFF4533at 171.936 kb on - strand, within GFF4533at 171.936 kb on - strand, within GFF4533at 172.184 kb on + strand, within GFF4533at 172.184 kb on + strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.244 kb on + strand, within GFF4533at 172.245 kb on - strand, within GFF4533at 172.245 kb on - strand, within GFF4533at 172.245 kb on - strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.278 kb on - strand, within GFF4533at 172.278 kb on - strand, within GFF4533at 172.278 kb on - strand, within GFF4533at 172.278 kb on - strand, within GFF4533at 172.648 kb on + strand, within GFF4534at 172.649 kb on - strand, within GFF4534at 172.649 kb on - strand, within GFF4534at 172.732 kb on + strand, within GFF4534at 172.732 kb on + strand, within GFF4534at 172.732 kb on + strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.966 kb on + strand, within GFF4534at 172.966 kb on + strand, within GFF4534at 173.167 kb on + strand, within GFF4534at 173.168 kb on - strand, within GFF4534at 173.369 kb on - strand, within GFF4534at 173.369 kb on - strand, within GFF4534at 173.491 kb on + strand, within GFF4534at 173.491 kb on + strand, within GFF4534at 173.492 kb on - strand, within GFF4534at 173.515 kb on + strand, within GFF4534at 173.515 kb on + strand, within GFF4534at 173.515 kb on + strand, within GFF4534at 173.515 kb on + strand, within GFF4534at 173.515 kb on + strand, within GFF4534at 173.515 kb on + strand, within GFF4534at 173.515 kb on + strand, within GFF4534at 173.516 kb on - strand, within GFF4534at 173.516 kb on - strand, within GFF4534at 173.516 kb on - strand, within GFF4534at 173.516 kb on - strand, within GFF4534at 173.516 kb on - strand, within GFF4534at 173.516 kb on - strand, within GFF4534at 173.539 kb on + strand, within GFF4534at 173.539 kb on + strand, within GFF4534at 173.540 kb on - strand, within GFF4534at 173.540 kb on - strand, within GFF4534at 173.540 kb on - strand, within GFF4534at 173.540 kb on - strand, within GFF4534at 173.578 kb on + strand, within GFF4534at 173.579 kb on - strand, within GFF4534at 173.611 kb on + strand, within GFF4534at 173.611 kb on + strand, within GFF4534at 173.611 kb on + strand, within GFF4534at 173.612 kb on - strand, within GFF4534at 173.612 kb on - strand, within GFF4534at 173.612 kb on - strand, within GFF4534at 173.734 kb on + strand, within GFF4534at 173.839 kb on + strandat 174.255 kb on + strand, within GFF4535at 174.256 kb on - strand, within GFF4535at 174.256 kb on - strand, within GFF4535at 174.256 kb on - strand, within GFF4535at 174.256 kb on - strand, within GFF4535at 174.267 kb on + strand, within GFF4535at 174.267 kb on + strand, within GFF4535at 174.267 kb on + strand, within GFF4535at 174.267 kb on + strand, within GFF4535at 174.267 kb on + strand, within GFF4535at 174.268 kb on - strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.319 kb on - strand, within GFF4535at 174.319 kb on - strand, within GFF4535at 174.592 kb on - strand, within GFF4535at 174.744 kb on + strand, within GFF4535at 174.744 kb on + strand, within GFF4535at 174.744 kb on + strand, within GFF4535at 174.745 kb on - strand, within GFF4535at 174.745 kb on - strand, within GFF4535at 174.745 kb on - strand, within GFF4535at 174.875 kb on - strandat 174.878 kb on + strandat 174.879 kb on - strandat 174.879 kb on - strandat 174.879 kb on - strandat 174.879 kb on - strandat 174.882 kb on + strandat 174.882 kb on + strandat 174.882 kb on + strandat 174.882 kb on + strandat 174.882 kb on + strandat 174.883 kb on - strandat 174.891 kb on + strandat 174.891 kb on + strandat 174.891 kb on + strandat 174.891 kb on + strandat 174.892 kb on - strandat 174.892 kb on - strandat 174.892 kb on - strandat 174.915 kb on + strand, within GFF4536at 174.916 kb on - strand, within GFF4536

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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171,683 + GFF4533 0.37 -2.1
171,683 + GFF4533 0.37 -0.3
171,683 + GFF4533 0.37 -0.8
171,684 - GFF4533 0.37 -2.1
171,684 - GFF4533 0.37 +0.1
171,684 - GFF4533 0.37 +0.1
171,684 - GFF4533 0.37 +0.2
171,684 - GFF4533 0.37 -1.3
171,684 - GFF4533 0.37 -0.2
171,755 + GFF4533 0.43 -0.1
171,755 + GFF4533 0.43 +2.1
171,755 + GFF4533 0.43 +0.3
171,755 + GFF4533 0.43 -0.2
171,755 + GFF4533 0.43 -1.9
171,755 + GFF4533 0.43 -0.7
171,755 + GFF4533 0.43 +1.8
171,755 + GFF4533 0.43 -0.1
171,756 - GFF4533 0.43 -1.3
171,756 - GFF4533 0.43 -3.0
171,756 - GFF4533 0.43 -0.8
171,756 - GFF4533 0.43 +2.0
171,756 - GFF4533 0.43 +0.5
171,756 - GFF4533 0.43 +2.8
171,756 - GFF4533 0.43 -1.2
171,756 - GFF4533 0.43 -0.1
171,827 + GFF4533 0.49 -0.7
171,827 + GFF4533 0.49 -0.1
171,828 - GFF4533 0.49 -0.5
171,935 + GFF4533 0.58 +1.1
171,935 + GFF4533 0.58 -1.9
171,936 - GFF4533 0.58 -0.1
171,936 - GFF4533 0.58 +0.0
171,936 - GFF4533 0.58 -1.0
171,936 - GFF4533 0.58 -1.9
171,936 - GFF4533 0.58 -1.0
172,184 + GFF4533 0.78 -0.7
172,184 + GFF4533 0.78 +0.5
172,185 - GFF4533 0.78 -1.5
172,185 - GFF4533 0.78 -3.0
172,185 - GFF4533 0.78 -2.4
172,185 - GFF4533 0.78 -2.3
172,185 - GFF4533 0.78 +0.4
172,185 - GFF4533 0.78 -1.2
172,185 - GFF4533 0.78 -0.8
172,185 - GFF4533 0.78 -0.7
172,244 + GFF4533 0.83 -0.5
172,245 - GFF4533 0.83 +1.2
172,245 - GFF4533 0.83 -0.8
172,245 - GFF4533 0.83 -0.2
172,277 + GFF4533 0.86 -0.1
172,277 + GFF4533 0.86 -0.4
172,277 + GFF4533 0.86 +0.6
172,277 + GFF4533 0.86 -1.0
172,277 + GFF4533 0.86 +0.8
172,277 + GFF4533 0.86 +1.3
172,277 + GFF4533 0.86 -1.5
172,277 + GFF4533 0.86 +1.0
172,277 + GFF4533 0.86 -2.5
172,277 + GFF4533 0.86 +0.7
172,278 - GFF4533 0.86 +0.4
172,278 - GFF4533 0.86 -0.2
172,278 - GFF4533 0.86 -0.4
172,278 - GFF4533 0.86 +1.5
172,648 + GFF4534 0.13 +0.3
172,649 - GFF4534 0.14 +0.0
172,649 - GFF4534 0.14 -1.1
172,732 + GFF4534 0.19 -1.9
172,732 + GFF4534 0.19 -2.4
172,732 + GFF4534 0.19 -3.0
172,733 - GFF4534 0.19 -0.2
172,733 - GFF4534 0.19 -2.2
172,733 - GFF4534 0.19 +0.3
172,733 - GFF4534 0.19 -1.1
172,733 - GFF4534 0.19 -0.7
172,733 - GFF4534 0.19 +0.2
172,733 - GFF4534 0.19 +0.8
172,733 - GFF4534 0.19 -2.6
172,733 - GFF4534 0.19 -0.3
172,733 - GFF4534 0.19 -2.0
172,733 - GFF4534 0.19 -2.3
172,733 - GFF4534 0.19 +0.8
172,733 - GFF4534 0.19 -0.2
172,733 - GFF4534 0.19 -2.1
172,733 - GFF4534 0.19 -0.4
172,733 - GFF4534 0.19 -0.8
172,733 - GFF4534 0.19 +0.4
172,966 + GFF4534 0.35 -1.1
172,966 + GFF4534 0.35 +1.2
173,167 + GFF4534 0.49 -1.1
173,168 - GFF4534 0.49 +0.3
173,369 - GFF4534 0.62 +0.2
173,369 - GFF4534 0.62 -2.5
173,491 + GFF4534 0.70 +0.2
173,491 + GFF4534 0.70 +0.4
173,492 - GFF4534 0.71 -1.5
173,515 + GFF4534 0.72 +0.2
173,515 + GFF4534 0.72 +1.5
173,515 + GFF4534 0.72 -1.0
173,515 + GFF4534 0.72 +0.3
173,515 + GFF4534 0.72 +2.3
173,515 + GFF4534 0.72 +3.3
173,515 + GFF4534 0.72 +0.0
173,516 - GFF4534 0.72 -1.9
173,516 - GFF4534 0.72 +0.9
173,516 - GFF4534 0.72 -2.1
173,516 - GFF4534 0.72 +0.1
173,516 - GFF4534 0.72 -0.4
173,516 - GFF4534 0.72 +1.1
173,539 + GFF4534 0.74 +0.0
173,539 + GFF4534 0.74 +0.1
173,540 - GFF4534 0.74 -2.5
173,540 - GFF4534 0.74 +0.8
173,540 - GFF4534 0.74 -1.0
173,540 - GFF4534 0.74 +2.0
173,578 + GFF4534 0.76 -2.6
173,579 - GFF4534 0.76 -2.2
173,611 + GFF4534 0.79 -0.2
173,611 + GFF4534 0.79 +0.0
173,611 + GFF4534 0.79 -3.1
173,612 - GFF4534 0.79 +0.3
173,612 - GFF4534 0.79 -0.4
173,612 - GFF4534 0.79 -1.0
173,734 + GFF4534 0.87 +0.8
173,839 + -1.0
174,255 + GFF4535 0.35 +1.5
174,256 - GFF4535 0.35 -1.8
174,256 - GFF4535 0.35 +1.0
174,256 - GFF4535 0.35 +1.3
174,256 - GFF4535 0.35 -0.6
174,267 + GFF4535 0.37 -2.0
174,267 + GFF4535 0.37 +0.0
174,267 + GFF4535 0.37 +0.1
174,267 + GFF4535 0.37 +0.8
174,267 + GFF4535 0.37 -0.2
174,268 - GFF4535 0.37 +0.0
174,318 + GFF4535 0.42 -2.9
174,318 + GFF4535 0.42 +0.3
174,318 + GFF4535 0.42 +0.8
174,318 + GFF4535 0.42 +0.3
174,318 + GFF4535 0.42 +0.2
174,318 + GFF4535 0.42 +1.3
174,318 + GFF4535 0.42 -1.1
174,318 + GFF4535 0.42 -2.2
174,319 - GFF4535 0.42 +0.3
174,319 - GFF4535 0.42 -0.5
174,592 - GFF4535 0.71 -2.0
174,744 + GFF4535 0.87 -1.7
174,744 + GFF4535 0.87 -0.0
174,744 + GFF4535 0.87 +1.3
174,745 - GFF4535 0.87 +0.3
174,745 - GFF4535 0.87 -1.4
174,745 - GFF4535 0.87 -1.1
174,875 - -1.1
174,878 + +0.2
174,879 - +1.3
174,879 - +1.1
174,879 - -0.3
174,879 - -1.6
174,882 + -2.4
174,882 + -0.8
174,882 + -2.0
174,882 + +0.1
174,882 + +0.3
174,883 - -2.1
174,891 + -1.3
174,891 + +2.8
174,891 + +1.9
174,891 + -2.2
174,892 - -0.9
174,892 - -2.2
174,892 - -0.4
174,915 + GFF4536 0.16 -1.5
174,916 - GFF4536 0.17 +0.2

Or see this region's nucleotide sequence