Strain Fitness in Variovorax sp. SCN45 around GFF4516

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
155,339	+				-0.8
155,339	+				-0.7
155,339	+				-2.7
155,339	+				+0.3
155,339	+				+0.3
155,340	-				-0.2
155,340	-				+0.4
155,340	-				-1.7
155,340	-				-1.1
155,340	-				+0.4
155,340	-				+1.7
155,340	-				-3.7
155,340	-				-1.7
155,340	-				+0.5
155,340	-				-2.2
155,340	-				+1.6
155,340	-				+0.3
155,519	-				-1.7
155,519	-				-2.0
155,519	-				-0.4
155,519	-				+0.0
155,562	+				-1.6
155,562	+				-2.5
155,562	+				-0.5
155,562	+				+1.1
155,562	+				-2.0
155,562	+				-0.8
155,562	+				-0.2
155,562	+				+1.2
155,562	+				-1.2
155,562	+				-1.7
155,563	-				-0.1
155,563	-				+3.1
155,563	-				+0.5
155,563	-				+0.3
155,563	-				-1.3
155,563	-				+0.1
155,563	-				-0.5
155,563	-				-2.4
155,563	-				-1.8
155,563	-				+0.3
155,563	-				-2.4
155,563	-				+0.9
155,563	-				+0.7
155,563	-				+0.6
155,563	-				-0.3
155,563	-				-1.9
155,564	+				+0.3
155,564	+				-2.3
155,564	+				-0.2
155,564	+				-0.6
155,564	+				+1.0
155,564	+				+0.3
155,564	+				-0.5
155,564	+				+0.3
155,564	+				+0.3
155,564	+				-0.2
155,564	+				-0.8
155,564	+				-0.1
155,565	-				-1.3
155,565	-				-1.3
155,565	-				-1.4
155,565	-				+1.1
155,565	-				+0.0
155,565	-				-1.0
155,565	-				-0.6
155,565	-				+1.8
155,565	-				+1.3
155,565	-				+1.1
155,565	-				-2.8
155,568	+				-2.2
155,568	+				-0.5
155,568	+				-0.1
155,568	+				+0.8
155,568	+				+1.3
155,568	+				-0.5
155,568	+				-1.4
155,568	+				+0.2
155,568	+				-2.0
155,568	+				-0.3
155,568	+				-0.6
155,569	-				-1.7
155,569	-				-0.7
155,569	-				-1.6
155,569	-				+0.5
155,569	-				+0.8
155,569	-				-1.0
155,569	-				+0.3
155,569	-				+1.0
155,569	-				-2.2
155,569	-				+0.4
155,569	-				-3.8
155,582	+				-0.8
155,582	+				-0.1
155,583	-				+0.8
155,583	-				-1.0
155,583	-				+1.3
155,619	+				-1.3
155,620	-				-0.3
155,620	-				-0.9
155,661	+				-1.8
155,661	+				-0.6
155,661	+				-3.6
155,661	+				-1.7
155,661	+				-0.9
155,661	+				-1.8
155,662	-				-0.8
155,665	+				+2.3
155,666	-				+1.1
155,666	-				+0.9
155,678	-				+0.4
155,678	-				-2.0
155,693	-				-2.2
155,702	+				+2.5
155,702	+				-0.6
155,702	+				-1.0
155,702	+				-1.4
155,702	+				-0.6
155,702	+				-0.8
155,702	+				-0.7
155,702	+				+0.3
155,703	-				-0.5
155,703	-				+1.2
155,703	-				+0.4
155,703	-				-1.2
155,703	-				-2.2
155,703	-				-1.9
155,703	-				-1.6
155,800	+		GFF4515	0.25	-0.5
155,800	+		GFF4515	0.25	+1.5
155,800	+		GFF4515	0.25	-2.6
155,801	-		GFF4515	0.25	+1.2
155,801	-		GFF4515	0.25	+5.5
155,801	-		GFF4515	0.25	-0.7
155,801	-		GFF4515	0.25	+0.8
155,876	+		GFF4515	0.37	-1.5
155,877	-		GFF4515	0.37	-1.7
155,944	+		GFF4515	0.47	+1.9
155,944	+		GFF4515	0.47	-1.5
155,944	+		GFF4515	0.47	-2.1
155,944	+		GFF4515	0.47	-0.4
155,944	+		GFF4515	0.47	-2.4
155,944	+		GFF4515	0.47	-0.5
155,944	+		GFF4515	0.47	-2.5
155,944	+		GFF4515	0.47	+1.3
155,944	+		GFF4515	0.47	-2.3
155,944	+		GFF4515	0.47	+1.1
155,944	+		GFF4515	0.47	+0.3
155,945	-		GFF4515	0.47	-0.0
155,945	-		GFF4515	0.47	-0.5
155,945	-		GFF4515	0.47	+1.3
155,945	-		GFF4515	0.47	-2.7
155,945	-		GFF4515	0.47	+0.5
155,945	-		GFF4515	0.47	-0.1
155,945	-		GFF4515	0.47	+2.8
155,945	-		GFF4515	0.47	-2.7
156,149	+		GFF4515	0.79	+4.3
156,149	+		GFF4515	0.79	-0.7
156,150	-		GFF4515	0.79	+0.6
156,227	+				-2.2
156,247	+				-0.5
156,253	+				+0.9
156,254	-				+0.3
156,258	+				+0.0
156,258	+				+1.1
156,259	-				-2.2
156,259	-				+1.3
156,259	-				+2.2
156,259	-				-0.2
156,259	-				-3.0
156,259	-				+0.1
156,284	+				-1.9
156,305	+				+1.3
156,335	-				-2.5
156,336	+				+1.6
156,336	+				-0.5
156,337	-				-1.5
156,379	+				-1.9
156,380	-				-3.0
156,380	-				-1.1
156,406	+		GFF4516	0.12	+0.5
156,406	+		GFF4516	0.12	-2.4
156,406	+		GFF4516	0.12	-2.3
156,406	+		GFF4516	0.12	-0.1
156,407	-		GFF4516	0.12	-2.0
156,420	+		GFF4516	0.13	+0.2
156,421	-		GFF4516	0.13	-1.8
156,461	+		GFF4516	0.17	-0.7
156,476	+		GFF4516	0.18	-0.5
156,479	+		GFF4516	0.18	-1.0
156,479	+		GFF4516	0.18	-1.3
156,479	+		GFF4516	0.18	+2.3
156,480	-		GFF4516	0.19	+2.6
156,480	-		GFF4516	0.19	-0.8
156,480	-		GFF4516	0.19	+0.0
156,485	-		GFF4516	0.19	+1.3
156,485	-		GFF4516	0.19	+0.6
156,515	+		GFF4516	0.22	-1.0
156,516	-		GFF4516	0.22	-1.7
156,539	-		GFF4516	0.24	+1.1
156,545	+		GFF4516	0.25	-1.1
156,545	+		GFF4516	0.25	+2.3
156,557	+		GFF4516	0.26	+2.3
156,557	+		GFF4516	0.26	-1.4
156,557	+		GFF4516	0.26	-3.2
156,557	+		GFF4516	0.26	+0.3
156,557	+		GFF4516	0.26	+1.0
156,558	-		GFF4516	0.26	+3.0
156,558	-		GFF4516	0.26	+0.5
156,558	-		GFF4516	0.26	+0.8
156,558	-		GFF4516	0.26	-0.8
156,558	-		GFF4516	0.26	-0.1
156,558	-		GFF4516	0.26	-2.7
156,558	-		GFF4516	0.26	+0.3
156,585	+		GFF4516	0.28	+0.0
156,586	-		GFF4516	0.28	-0.5
156,586	-		GFF4516	0.28	+2.3
156,588	+		GFF4516	0.29	+0.8
156,588	+		GFF4516	0.29	-1.0
156,588	+		GFF4516	0.29	-0.5
156,588	+		GFF4516	0.29	-0.2
156,588	+		GFF4516	0.29	-1.9
156,588	+		GFF4516	0.29	-0.3
156,588	+		GFF4516	0.29	-2.0
156,588	+		GFF4516	0.29	+0.5
156,588	+		GFF4516	0.29	-0.6
156,588	+		GFF4516	0.29	+1.2
156,588	+		GFF4516	0.29	-2.1
156,588	+		GFF4516	0.29	-1.2
156,588	+		GFF4516	0.29	-1.4
156,588	+		GFF4516	0.29	+2.2
156,588	+		GFF4516	0.29	-1.2
156,588	+		GFF4516	0.29	-3.2
156,588	+		GFF4516	0.29	+1.0
156,588	+		GFF4516	0.29	+0.0
156,588	+		GFF4516	0.29	-1.1
156,588	+		GFF4516	0.29	-0.0
156,588	+		GFF4516	0.29	+2.3
156,588	+		GFF4516	0.29	-3.3
156,588	+		GFF4516	0.29	+0.6
156,589	-		GFF4516	0.29	+0.1
156,589	-		GFF4516	0.29	+0.3
156,589	-		GFF4516	0.29	-0.6
156,589	-		GFF4516	0.29	-0.7
156,589	-		GFF4516	0.29	-0.8
156,589	-		GFF4516	0.29	+1.1
156,589	-		GFF4516	0.29	-0.2
156,589	-		GFF4516	0.29	+0.5
156,589	-		GFF4516	0.29	-3.2
156,589	-		GFF4516	0.29	-2.3
156,589	-		GFF4516	0.29	-0.9
156,589	-		GFF4516	0.29	-1.1
156,589	-		GFF4516	0.29	-0.4
156,589	-		GFF4516	0.29	-1.9
156,589	-		GFF4516	0.29	-0.7
156,589	-		GFF4516	0.29	-0.7
156,589	-		GFF4516	0.29	-0.5
156,589	-		GFF4516	0.29	-0.7
156,589	-		GFF4516	0.29	-1.5
156,589	-		GFF4516	0.29	-0.8
156,589	-		GFF4516	0.29	-0.2
156,589	-		GFF4516	0.29	-1.6
156,589	-		GFF4516	0.29	+1.0
156,592	+		GFF4516	0.29	-0.3
156,592	+		GFF4516	0.29	-2.2
156,592	+		GFF4516	0.29	-1.0
156,592	+		GFF4516	0.29	-1.0
156,592	+		GFF4516	0.29	-0.7
156,592	+		GFF4516	0.29	-0.0
156,592	+		GFF4516	0.29	-0.2
156,592	+		GFF4516	0.29	+1.7
156,593	-		GFF4516	0.29	+0.3
156,593	-		GFF4516	0.29	+2.4
156,593	-		GFF4516	0.29	-0.7
156,593	-		GFF4516	0.29	-1.8
156,593	-		GFF4516	0.29	-0.2
156,593	-		GFF4516	0.29	+1.3
156,634	+		GFF4516	0.33	-1.0
156,634	+		GFF4516	0.33	-1.6
156,634	+		GFF4516	0.33	-0.5
156,634	+		GFF4516	0.33	+0.5
156,634	+		GFF4516	0.33	-2.9
156,634	+		GFF4516	0.33	+0.0
156,635	-		GFF4516	0.33	+2.3
156,635	-		GFF4516	0.33	-1.1
156,635	-		GFF4516	0.33	-3.8
156,635	-		GFF4516	0.33	-1.7
156,635	-		GFF4516	0.33	+0.5
156,635	-		GFF4516	0.33	+0.9
156,635	-		GFF4516	0.33	-1.0
156,635	-		GFF4516	0.33	+0.5
156,683	+		GFF4516	0.37	+1.9
156,683	+		GFF4516	0.37	+0.3
156,683	+		GFF4516	0.37	-0.4
156,683	+		GFF4516	0.37	-2.3
156,683	+		GFF4516	0.37	-1.0
156,684	-		GFF4516	0.38	+1.6
156,684	-		GFF4516	0.38	-1.2
156,684	-		GFF4516	0.38	-2.7
156,684	-		GFF4516	0.38	+0.3
156,684	-		GFF4516	0.38	-0.8
156,746	+		GFF4516	0.43	-0.6
156,747	-		GFF4516	0.43	-0.2
156,747	-		GFF4516	0.43	+0.5
156,747	-		GFF4516	0.43	-0.8
156,747	-		GFF4516	0.43	-1.4
156,747	-		GFF4516	0.43	-3.3
156,775	+		GFF4516	0.46	+1.5
156,775	+		GFF4516	0.46	-1.8
156,785	+		GFF4516	0.47	+4.1
156,786	-		GFF4516	0.47	-1.0
156,831	-		GFF4516	0.51	-0.5
156,850	+		GFF4516	0.53	-1.7
156,877	+		GFF4516	0.55	+0.3
156,877	+		GFF4516	0.55	-1.7
156,878	-		GFF4516	0.56	-1.7
156,955	+		GFF4516	0.63	-1.4
156,955	+		GFF4516	0.63	-1.8
156,955	+		GFF4516	0.63	-0.4
156,955	+		GFF4516	0.63	+1.5
156,990	-		GFF4516	0.66	+0.2
157,032	+		GFF4516	0.70	+0.6
157,033	-		GFF4516	0.70	-0.5
157,074	-		GFF4516	0.74	-2.7
157,115	+		GFF4516	0.78	+1.3
157,115	+		GFF4516	0.78	-0.5
157,165	-		GFF4516	0.82	-0.3
157,227	-		GFF4516	0.88	+0.9
157,281	-				+0.0
157,323	+				-0.2
157,323	+				+0.4
157,323	+				-0.5
157,324	-				-1.0
157,399	+				+2.3
157,399	+				-1.5
157,399	+				-1.7
157,400	-				-2.1
157,400	-				-0.2
157,405	+				-0.1
157,405	+				-1.2
157,406	-				-1.5
157,428	+				+0.7
157,494	+				+0.3
157,495	-				-1.4
157,503	+				-0.3
157,619	+		GFF4517	0.11	-0.4
157,619	+		GFF4517	0.11	+1.3
157,619	+		GFF4517	0.11	-1.1
157,619	+		GFF4517	0.11	-0.8
157,619	+		GFF4517	0.11	-0.5
157,619	+		GFF4517	0.11	-0.1
157,619	+		GFF4517	0.11	+2.1
157,619	+		GFF4517	0.11	+0.4
157,619	+		GFF4517	0.11	-2.1
157,619	+		GFF4517	0.11	-0.5
157,619	+		GFF4517	0.11	+1.8
157,619	+		GFF4517	0.11	+0.4
157,620	-		GFF4517	0.12	+0.4
157,620	-		GFF4517	0.12	-2.1
157,620	-		GFF4517	0.12	-1.8
157,620	-		GFF4517	0.12	-0.6
157,620	-		GFF4517	0.12	-0.9
157,620	-		GFF4517	0.12	+0.0
157,620	-		GFF4517	0.12	+1.1
157,620	-		GFF4517	0.12	-0.7
157,751	+		GFF4517	0.22	-1.7
157,751	+		GFF4517	0.22	-0.7
157,751	+		GFF4517	0.22	-1.5
157,751	+		GFF4517	0.22	+1.0
157,751	+		GFF4517	0.22	+0.3
157,751	+		GFF4517	0.22	+0.7
157,751	+		GFF4517	0.22	-1.7
157,751	+		GFF4517	0.22	+0.3
157,751	+		GFF4517	0.22	-1.1
157,751	+		GFF4517	0.22	-1.9
157,751	+		GFF4517	0.22	+0.3
157,752	-		GFF4517	0.23	-0.7
157,752	-		GFF4517	0.23	+0.7
157,752	-		GFF4517	0.23	-2.8
157,752	-		GFF4517	0.23	-1.8
157,752	-		GFF4517	0.23	+0.8
157,752	-		GFF4517	0.23	-2.5
157,752	-		GFF4517	0.23	-0.3
157,752	-		GFF4517	0.23	-0.7
157,752	-		GFF4517	0.23	-0.8
158,096	+		GFF4517	0.51	-0.0
158,096	+		GFF4517	0.51	-1.3
158,096	+		GFF4517	0.51	-2.8
158,096	+		GFF4517	0.51	+3.2
158,096	+		GFF4517	0.51	+0.6
158,097	-		GFF4517	0.51	+0.1
158,097	-		GFF4517	0.51	-0.7
158,097	-		GFF4517	0.51	-0.3
158,097	-		GFF4517	0.51	-0.1
158,118	-		GFF4517	0.53	+1.8
158,213	+		GFF4517	0.61	-0.2
158,213	+		GFF4517	0.61	-1.8
158,213	+		GFF4517	0.61	+0.6
158,213	+		GFF4517	0.61	-0.7
158,214	-		GFF4517	0.61	-0.4