Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4458 and GFF4459 are separated by 21 nucleotides GFF4459 and GFF4460 are separated by 15 nucleotides GFF4460 and GFF4461 are separated by 16 nucleotides
GFF4458 - hypothetical protein, at 99,176 to 99,580
GFF4458
GFF4459 - Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 99,602 to 100,465
GFF4459
GFF4460 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 100,481 to 101,470
GFF4460
GFF4461 - hypothetical protein, at 101,487 to 103,649
GFF4461
Position (kb) 100
101
102 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 99.587 kb on + strand at 99.588 kb on - strand at 99.601 kb on + strand at 99.601 kb on + strand at 99.601 kb on + strand at 99.602 kb on - strand at 99.602 kb on - strand at 99.602 kb on - strand at 99.674 kb on + strand at 99.674 kb on + strand at 99.674 kb on + strand at 99.675 kb on - strand at 99.675 kb on - strand at 99.707 kb on + strand, within GFF4459 at 99.707 kb on + strand, within GFF4459 at 99.708 kb on - strand, within GFF4459 at 99.708 kb on - strand, within GFF4459 at 99.708 kb on - strand, within GFF4459 at 99.708 kb on - strand, within GFF4459 at 99.863 kb on + strand, within GFF4459 at 100.256 kb on + strand, within GFF4459 at 100.284 kb on + strand, within GFF4459 at 100.284 kb on + strand, within GFF4459 at 100.284 kb on + strand, within GFF4459 at 100.285 kb on - strand, within GFF4459 at 100.285 kb on - strand, within GFF4459 at 100.898 kb on + strand, within GFF4460 at 100.899 kb on - strand, within GFF4460 at 100.899 kb on - strand, within GFF4460 at 100.899 kb on - strand, within GFF4460 at 100.899 kb on - strand, within GFF4460 at 101.000 kb on + strand, within GFF4460 at 101.001 kb on - strand, within GFF4460 at 101.457 kb on - strand at 101.457 kb on - strand at 101.457 kb on - strand at 101.761 kb on + strand, within GFF4461 at 101.891 kb on - strand, within GFF4461 at 101.891 kb on - strand, within GFF4461 at 102.073 kb on + strand, within GFF4461 at 102.073 kb on + strand, within GFF4461 at 102.073 kb on + strand, within GFF4461 at 102.073 kb on + strand, within GFF4461 at 102.074 kb on - strand, within GFF4461 at 102.074 kb on - strand, within GFF4461 at 102.459 kb on + strand, within GFF4461
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 99,587 + -1.9 99,588 - +0.1 99,601 + -1.7 99,601 + +0.1 99,601 + +1.2 99,602 - -2.2 99,602 - +0.5 99,602 - +3.1 99,674 + +1.2 99,674 + -1.0 99,674 + -1.2 99,675 - +0.5 99,675 - +0.4 99,707 + GFF4459 0.12 -0.9 99,707 + GFF4459 0.12 -3.9 99,708 - GFF4459 0.12 -0.9 99,708 - GFF4459 0.12 -2.0 99,708 - GFF4459 0.12 -1.6 99,708 - GFF4459 0.12 -1.3 99,863 + GFF4459 0.30 -2.4 100,256 + GFF4459 0.76 -0.7 100,284 + GFF4459 0.79 -2.0 100,284 + GFF4459 0.79 +0.2 100,284 + GFF4459 0.79 +0.1 100,285 - GFF4459 0.79 +0.4 100,285 - GFF4459 0.79 +0.8 100,898 + GFF4460 0.42 -0.7 100,899 - GFF4460 0.42 -0.1 100,899 - GFF4460 0.42 +1.3 100,899 - GFF4460 0.42 +0.0 100,899 - GFF4460 0.42 +0.0 101,000 + GFF4460 0.52 -1.7 101,001 - GFF4460 0.53 -2.0 101,457 - +1.5 101,457 - +1.3 101,457 - -0.8 101,761 + GFF4461 0.13 +2.3 101,891 - GFF4461 0.19 +0.6 101,891 - GFF4461 0.19 +0.9 102,073 + GFF4461 0.27 +0.5 102,073 + GFF4461 0.27 -0.6 102,073 + GFF4461 0.27 -2.4 102,073 + GFF4461 0.27 -2.2 102,074 - GFF4461 0.27 +0.1 102,074 - GFF4461 0.27 -0.2 102,459 + GFF4461 0.45 -0.1
Or see this region's nucleotide sequence