Strain Fitness in Variovorax sp. SCN45 around GFF4451

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4450 and GFF4451 are separated by 32 nucleotidesGFF4451 and GFF4452 are separated by 6 nucleotides GFF4450 - Rod shape-determining protein RodA, at 89,744 to 90,898 GFF4450 GFF4451 - Permease of the drug/metabolite transporter (DMT) superfamily, at 90,931 to 92,772 GFF4451 GFF4452 - Two-component transcriptional response regulator, LuxR family, at 92,779 to 93,537 GFF4452 Position (kb) 90 91 92 93Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 91.043 kb on + strandat 91.043 kb on + strandat 91.044 kb on - strandat 91.044 kb on - strandat 91.156 kb on + strand, within GFF4451at 91.156 kb on + strand, within GFF4451at 91.231 kb on + strand, within GFF4451at 91.272 kb on - strand, within GFF4451at 91.517 kb on + strand, within GFF4451at 91.517 kb on + strand, within GFF4451at 91.517 kb on + strand, within GFF4451at 91.517 kb on + strand, within GFF4451at 91.517 kb on + strand, within GFF4451at 91.517 kb on + strand, within GFF4451at 91.517 kb on + strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.655 kb on + strand, within GFF4451at 91.656 kb on - strand, within GFF4451at 91.680 kb on - strand, within GFF4451at 92.010 kb on - strand, within GFF4451at 92.120 kb on + strand, within GFF4451at 92.120 kb on + strand, within GFF4451at 92.120 kb on + strand, within GFF4451at 92.120 kb on + strand, within GFF4451at 92.120 kb on + strand, within GFF4451at 92.121 kb on - strand, within GFF4451at 92.121 kb on - strand, within GFF4451at 92.121 kb on - strand, within GFF4451at 92.249 kb on + strand, within GFF4451at 92.249 kb on + strand, within GFF4451at 92.249 kb on + strand, within GFF4451at 92.250 kb on + strand, within GFF4451at 92.250 kb on - strand, within GFF4451at 92.250 kb on - strand, within GFF4451at 92.250 kb on - strand, within GFF4451at 92.392 kb on + strand, within GFF4451at 92.392 kb on + strand, within GFF4451at 92.392 kb on + strand, within GFF4451at 92.392 kb on + strand, within GFF4451at 92.392 kb on + strand, within GFF4451at 92.392 kb on + strand, within GFF4451at 92.393 kb on - strand, within GFF4451at 92.393 kb on - strand, within GFF4451at 92.393 kb on - strand, within GFF4451at 92.393 kb on - strand, within GFF4451at 92.393 kb on - strand, within GFF4451at 92.393 kb on - strand, within GFF4451at 92.393 kb on - strand, within GFF4451at 92.393 kb on - strand, within GFF4451at 92.393 kb on - strand, within GFF4451at 92.396 kb on + strand, within GFF4451at 92.396 kb on + strand, within GFF4451at 92.396 kb on + strand, within GFF4451at 92.396 kb on + strand, within GFF4451at 92.396 kb on + strand, within GFF4451at 92.396 kb on + strand, within GFF4451at 92.396 kb on + strand, within GFF4451at 92.396 kb on + strand, within GFF4451at 92.396 kb on + strand, within GFF4451at 92.396 kb on + strand, within GFF4451at 92.396 kb on + strand, within GFF4451at 92.396 kb on + strand, within GFF4451at 92.396 kb on + strand, within GFF4451at 92.396 kb on + strand, within GFF4451at 92.397 kb on - strand, within GFF4451at 92.397 kb on - strand, within GFF4451at 92.397 kb on - strand, within GFF4451at 92.397 kb on - strand, within GFF4451at 92.397 kb on - strand, within GFF4451at 92.397 kb on - strand, within GFF4451at 92.397 kb on - strand, within GFF4451at 92.397 kb on - strand, within GFF4451at 92.397 kb on - strand, within GFF4451at 92.414 kb on + strand, within GFF4451at 92.415 kb on - strand, within GFF4451at 92.447 kb on + strand, within GFF4451at 92.447 kb on + strand, within GFF4451at 92.447 kb on + strand, within GFF4451at 92.447 kb on + strand, within GFF4451at 92.447 kb on + strand, within GFF4451at 92.448 kb on - strand, within GFF4451at 92.448 kb on - strand, within GFF4451at 92.448 kb on - strand, within GFF4451at 92.448 kb on - strand, within GFF4451at 92.448 kb on - strand, within GFF4451at 92.603 kb on + strandat 92.603 kb on + strandat 92.603 kb on + strandat 92.604 kb on - strandat 92.604 kb on - strandat 92.604 kb on - strandat 92.604 kb on - strandat 92.925 kb on - strand, within GFF4452at 92.925 kb on - strand, within GFF4452at 92.925 kb on - strand, within GFF4452at 92.925 kb on - strand, within GFF4452at 93.074 kb on + strand, within GFF4452at 93.075 kb on - strand, within GFF4452at 93.075 kb on - strand, within GFF4452at 93.182 kb on + strand, within GFF4452at 93.182 kb on + strand, within GFF4452at 93.182 kb on + strand, within GFF4452at 93.183 kb on - strand, within GFF4452at 93.183 kb on - strand, within GFF4452at 93.183 kb on - strand, within GFF4452at 93.183 kb on - strand, within GFF4452at 93.183 kb on - strand, within GFF4452at 93.519 kb on + strandat 93.520 kb on - strandat 93.537 kb on + strandat 93.538 kb on - strandat 93.538 kb on - strandat 93.538 kb on - strandat 93.538 kb on - strandat 93.538 kb on - strandat 93.538 kb on - strandat 93.573 kb on - strandat 93.634 kb on + strandat 93.686 kb on + strandat 93.697 kb on + strandat 93.697 kb on + strandat 93.697 kb on + strandat 93.697 kb on + strandat 93.697 kb on + strandat 93.698 kb on - strandat 93.698 kb on - strandat 93.698 kb on - strandat 93.698 kb on - strandat 93.732 kb on + strandat 93.732 kb on + strandat 93.732 kb on + strandat 93.732 kb on + strandat 93.733 kb on - strandat 93.733 kb on - strandat 93.733 kb on - strandat 93.733 kb on - strandat 93.733 kb on - strandat 93.733 kb on - strandat 93.737 kb on + strandat 93.737 kb on + strandat 93.738 kb on - strandat 93.738 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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91,043 + -0.0
91,043 + -2.0
91,044 - -2.3
91,044 - -2.5
91,156 + GFF4451 0.12 -0.4
91,156 + GFF4451 0.12 -0.2
91,231 + GFF4451 0.16 -0.4
91,272 - GFF4451 0.19 -1.2
91,517 + GFF4451 0.32 -0.4
91,517 + GFF4451 0.32 +0.2
91,517 + GFF4451 0.32 +0.3
91,517 + GFF4451 0.32 -0.6
91,517 + GFF4451 0.32 +0.6
91,517 + GFF4451 0.32 +1.3
91,517 + GFF4451 0.32 +0.6
91,518 - GFF4451 0.32 -0.5
91,518 - GFF4451 0.32 -0.2
91,518 - GFF4451 0.32 +0.4
91,518 - GFF4451 0.32 +0.2
91,518 - GFF4451 0.32 -0.8
91,518 - GFF4451 0.32 -0.7
91,518 - GFF4451 0.32 +1.1
91,518 - GFF4451 0.32 -0.7
91,518 - GFF4451 0.32 +0.3
91,518 - GFF4451 0.32 -0.7
91,518 - GFF4451 0.32 -1.0
91,518 - GFF4451 0.32 +0.3
91,518 - GFF4451 0.32 -1.8
91,655 + GFF4451 0.39 -0.6
91,656 - GFF4451 0.39 -2.6
91,680 - GFF4451 0.41 +0.6
92,010 - GFF4451 0.59 +1.0
92,120 + GFF4451 0.65 -2.1
92,120 + GFF4451 0.65 -1.5
92,120 + GFF4451 0.65 -1.2
92,120 + GFF4451 0.65 -1.0
92,120 + GFF4451 0.65 -1.0
92,121 - GFF4451 0.65 +0.3
92,121 - GFF4451 0.65 -1.1
92,121 - GFF4451 0.65 -0.2
92,249 + GFF4451 0.72 -0.2
92,249 + GFF4451 0.72 +0.4
92,249 + GFF4451 0.72 -0.4
92,250 + GFF4451 0.72 -0.6
92,250 - GFF4451 0.72 -1.5
92,250 - GFF4451 0.72 +3.5
92,250 - GFF4451 0.72 -0.7
92,392 + GFF4451 0.79 +0.3
92,392 + GFF4451 0.79 -1.0
92,392 + GFF4451 0.79 -1.0
92,392 + GFF4451 0.79 -3.1
92,392 + GFF4451 0.79 +0.8
92,392 + GFF4451 0.79 +2.0
92,393 - GFF4451 0.79 +1.1
92,393 - GFF4451 0.79 -3.7
92,393 - GFF4451 0.79 +0.8
92,393 - GFF4451 0.79 -0.1
92,393 - GFF4451 0.79 -1.1
92,393 - GFF4451 0.79 -0.6
92,393 - GFF4451 0.79 -1.4
92,393 - GFF4451 0.79 -0.7
92,393 - GFF4451 0.79 -1.8
92,396 + GFF4451 0.80 +1.8
92,396 + GFF4451 0.80 +0.0
92,396 + GFF4451 0.80 +0.1
92,396 + GFF4451 0.80 -1.1
92,396 + GFF4451 0.80 -0.4
92,396 + GFF4451 0.80 +1.1
92,396 + GFF4451 0.80 +0.8
92,396 + GFF4451 0.80 -3.0
92,396 + GFF4451 0.80 +0.8
92,396 + GFF4451 0.80 +0.9
92,396 + GFF4451 0.80 +0.7
92,396 + GFF4451 0.80 -0.1
92,396 + GFF4451 0.80 -2.2
92,396 + GFF4451 0.80 +1.3
92,397 - GFF4451 0.80 -1.7
92,397 - GFF4451 0.80 -2.6
92,397 - GFF4451 0.80 -2.1
92,397 - GFF4451 0.80 -1.3
92,397 - GFF4451 0.80 -2.6
92,397 - GFF4451 0.80 +0.3
92,397 - GFF4451 0.80 -0.0
92,397 - GFF4451 0.80 -1.8
92,397 - GFF4451 0.80 -1.0
92,414 + GFF4451 0.81 -0.5
92,415 - GFF4451 0.81 +1.1
92,447 + GFF4451 0.82 +0.8
92,447 + GFF4451 0.82 -1.6
92,447 + GFF4451 0.82 -0.7
92,447 + GFF4451 0.82 +0.6
92,447 + GFF4451 0.82 -1.1
92,448 - GFF4451 0.82 -0.7
92,448 - GFF4451 0.82 -0.1
92,448 - GFF4451 0.82 -2.2
92,448 - GFF4451 0.82 -0.8
92,448 - GFF4451 0.82 -1.4
92,603 + +3.2
92,603 + -1.9
92,603 + -2.7
92,604 - -2.4
92,604 - +1.7
92,604 - +0.6
92,604 - -1.5
92,925 - GFF4452 0.19 -0.8
92,925 - GFF4452 0.19 +0.4
92,925 - GFF4452 0.19 -0.2
92,925 - GFF4452 0.19 +3.7
93,074 + GFF4452 0.39 -0.2
93,075 - GFF4452 0.39 -1.9
93,075 - GFF4452 0.39 +0.7
93,182 + GFF4452 0.53 +0.3
93,182 + GFF4452 0.53 -0.7
93,182 + GFF4452 0.53 -1.6
93,183 - GFF4452 0.53 +0.8
93,183 - GFF4452 0.53 +1.3
93,183 - GFF4452 0.53 -0.2
93,183 - GFF4452 0.53 -1.6
93,183 - GFF4452 0.53 -2.7
93,519 + +0.3
93,520 - -0.9
93,537 + -0.4
93,538 - -0.0
93,538 - -3.3
93,538 - +2.6
93,538 - -1.8
93,538 - +1.2
93,538 - +0.0
93,573 - -1.6
93,634 + +0.8
93,686 + +3.0
93,697 + -1.0
93,697 + -2.1
93,697 + +0.9
93,697 + +0.7
93,697 + -0.3
93,698 - -1.8
93,698 - -1.4
93,698 - +1.3
93,698 - -1.7
93,732 + -0.2
93,732 + +1.7
93,732 + -0.2
93,732 + -2.1
93,733 - -1.1
93,733 - +1.6
93,733 - +0.4
93,733 - +0.6
93,733 - +0.5
93,733 - +0.0
93,737 + -0.1
93,737 + +0.8
93,738 - +2.5
93,738 - -0.9

Or see this region's nucleotide sequence