Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4417 and GFF4418 overlap by 4 nucleotides GFF4418 and GFF4419 are separated by 12 nucleotides GFF4419 and GFF4420 overlap by 4 nucleotides
GFF4417 - Conjugative transfer protein TrbE, at 52,682 to 55,156
GFF4417
GFF4418 - Conjugative transfer protein TrbJ, at 55,153 to 55,908
GFF4418
GFF4419 - Conjugative transfer protein TrbK, at 55,921 to 56,205
GFF4419
GFF4420 - Conjugative transfer protein TrbL, at 56,202 to 57,581
GFF4420
Position (kb) 55
56 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 54.161 kb on + strand, within GFF4417 at 54.161 kb on + strand, within GFF4417 at 54.162 kb on - strand, within GFF4417 at 54.162 kb on - strand, within GFF4417 at 54.162 kb on - strand, within GFF4417 at 54.162 kb on - strand, within GFF4417 at 54.225 kb on - strand, within GFF4417 at 54.261 kb on + strand, within GFF4417 at 54.261 kb on + strand, within GFF4417 at 54.261 kb on + strand, within GFF4417 at 54.261 kb on + strand, within GFF4417 at 54.261 kb on + strand, within GFF4417 at 54.261 kb on + strand, within GFF4417 at 54.261 kb on + strand, within GFF4417 at 54.261 kb on + strand, within GFF4417 at 54.261 kb on + strand, within GFF4417 at 54.261 kb on + strand, within GFF4417 at 54.264 kb on + strand, within GFF4417 at 54.264 kb on + strand, within GFF4417 at 54.264 kb on + strand, within GFF4417 at 54.264 kb on + strand, within GFF4417 at 54.264 kb on + strand, within GFF4417 at 54.264 kb on + strand, within GFF4417 at 54.265 kb on - strand, within GFF4417 at 54.265 kb on - strand, within GFF4417 at 54.265 kb on - strand, within GFF4417 at 54.276 kb on + strand, within GFF4417 at 54.276 kb on + strand, within GFF4417 at 54.276 kb on + strand, within GFF4417 at 54.276 kb on + strand, within GFF4417 at 54.276 kb on + strand, within GFF4417 at 54.276 kb on + strand, within GFF4417 at 54.276 kb on + strand, within GFF4417 at 54.277 kb on - strand, within GFF4417 at 54.277 kb on - strand, within GFF4417 at 54.277 kb on - strand, within GFF4417 at 54.277 kb on - strand, within GFF4417 at 54.413 kb on + strand, within GFF4417 at 54.413 kb on + strand, within GFF4417 at 54.414 kb on - strand, within GFF4417 at 54.414 kb on - strand, within GFF4417 at 54.414 kb on - strand, within GFF4417 at 54.414 kb on - strand, within GFF4417 at 54.414 kb on - strand, within GFF4417 at 54.414 kb on - strand, within GFF4417 at 54.414 kb on - strand, within GFF4417 at 54.414 kb on - strand, within GFF4417 at 54.414 kb on - strand, within GFF4417 at 54.414 kb on - strand, within GFF4417 at 54.542 kb on + strand, within GFF4417 at 54.542 kb on + strand, within GFF4417 at 54.542 kb on + strand, within GFF4417 at 54.542 kb on + strand, within GFF4417 at 54.542 kb on + strand, within GFF4417 at 54.542 kb on + strand, within GFF4417 at 54.542 kb on + strand, within GFF4417 at 54.542 kb on + strand, within GFF4417 at 54.542 kb on + strand, within GFF4417 at 54.542 kb on + strand, within GFF4417 at 54.542 kb on + strand, within GFF4417 at 54.542 kb on + strand, within GFF4417 at 54.542 kb on + strand, within GFF4417 at 54.542 kb on + strand, within GFF4417 at 54.589 kb on - strand, within GFF4417 at 54.589 kb on - strand, within GFF4417 at 54.589 kb on - strand, within GFF4417 at 54.593 kb on - strand, within GFF4417 at 54.815 kb on + strand, within GFF4417 at 54.815 kb on + strand, within GFF4417 at 54.815 kb on + strand, within GFF4417 at 54.815 kb on + strand, within GFF4417 at 54.815 kb on + strand, within GFF4417 at 54.815 kb on + strand, within GFF4417 at 54.881 kb on + strand, within GFF4417 at 54.881 kb on + strand, within GFF4417 at 54.881 kb on + strand, within GFF4417 at 54.881 kb on + strand, within GFF4417 at 54.881 kb on + strand, within GFF4417 at 54.881 kb on + strand, within GFF4417 at 54.881 kb on + strand, within GFF4417 at 54.882 kb on - strand, within GFF4417 at 54.882 kb on - strand, within GFF4417 at 54.882 kb on - strand, within GFF4417 at 54.882 kb on - strand, within GFF4417 at 54.882 kb on - strand, within GFF4417 at 54.882 kb on - strand, within GFF4417 at 54.882 kb on - strand, within GFF4417 at 55.002 kb on + strand at 55.003 kb on - strand at 55.164 kb on + strand at 55.164 kb on + strand at 55.165 kb on - strand at 55.165 kb on - strand at 55.468 kb on + strand, within GFF4418 at 55.468 kb on + strand, within GFF4418 at 55.468 kb on + strand, within GFF4418 at 55.468 kb on + strand, within GFF4418 at 55.468 kb on + strand, within GFF4418 at 55.508 kb on - strand, within GFF4418 at 55.519 kb on + strand, within GFF4418 at 55.519 kb on + strand, within GFF4418 at 55.519 kb on + strand, within GFF4418 at 55.519 kb on + strand, within GFF4418 at 55.519 kb on + strand, within GFF4418 at 55.520 kb on - strand, within GFF4418 at 55.520 kb on - strand, within GFF4418 at 55.520 kb on - strand, within GFF4418 at 55.520 kb on - strand, within GFF4418 at 55.520 kb on - strand, within GFF4418 at 55.520 kb on - strand, within GFF4418 at 55.520 kb on - strand, within GFF4418 at 55.549 kb on + strand, within GFF4418 at 55.549 kb on + strand, within GFF4418 at 55.549 kb on + strand, within GFF4418 at 55.549 kb on + strand, within GFF4418 at 55.549 kb on + strand, within GFF4418 at 55.549 kb on + strand, within GFF4418 at 55.549 kb on + strand, within GFF4418 at 55.549 kb on + strand, within GFF4418 at 55.550 kb on - strand, within GFF4418 at 55.550 kb on - strand, within GFF4418 at 55.550 kb on - strand, within GFF4418 at 55.550 kb on - strand, within GFF4418 at 55.550 kb on - strand, within GFF4418 at 55.550 kb on - strand, within GFF4418 at 55.550 kb on - strand, within GFF4418 at 55.550 kb on - strand, within GFF4418 at 55.550 kb on - strand, within GFF4418 at 55.550 kb on - strand, within GFF4418 at 55.550 kb on - strand, within GFF4418 at 55.550 kb on - strand, within GFF4418 at 55.550 kb on - strand, within GFF4418 at 55.550 kb on - strand, within GFF4418 at 55.550 kb on - strand, within GFF4418 at 55.733 kb on + strand, within GFF4418 at 55.733 kb on + strand, within GFF4418 at 55.734 kb on - strand, within GFF4418 at 55.766 kb on + strand, within GFF4418 at 55.767 kb on - strand, within GFF4418 at 55.873 kb on + strand at 55.873 kb on + strand at 55.873 kb on + strand at 55.873 kb on + strand at 55.874 kb on - strand at 55.874 kb on - strand at 55.897 kb on + strand at 55.897 kb on + strand at 55.898 kb on - strand at 56.141 kb on - strand, within GFF4419 at 56.246 kb on + strand at 56.246 kb on + strand at 56.246 kb on + strand at 56.246 kb on + strand at 56.246 kb on + strand at 56.246 kb on + strand at 56.246 kb on + strand at 56.247 kb on - strand at 56.247 kb on - strand at 56.250 kb on + strand at 56.250 kb on + strand at 56.250 kb on + strand at 56.250 kb on + strand at 56.250 kb on + strand at 56.250 kb on + strand at 56.250 kb on + strand at 56.250 kb on + strand at 56.250 kb on + strand at 56.250 kb on + strand at 56.251 kb on - strand at 56.251 kb on - strand at 56.251 kb on - strand at 56.251 kb on - strand at 56.251 kb on - strand at 56.251 kb on - strand at 56.251 kb on - strand at 56.251 kb on - strand at 56.251 kb on - strand at 56.251 kb on - strand at 56.340 kb on + strand, within GFF4420 at 56.340 kb on + strand, within GFF4420 at 56.340 kb on + strand, within GFF4420 at 56.340 kb on + strand, within GFF4420 at 56.340 kb on + strand, within GFF4420 at 56.340 kb on + strand, within GFF4420 at 56.341 kb on - strand, within GFF4420 at 56.341 kb on - strand, within GFF4420 at 56.341 kb on - strand, within GFF4420 at 56.409 kb on + strand, within GFF4420 at 56.409 kb on + strand, within GFF4420 at 56.409 kb on + strand, within GFF4420 at 56.409 kb on + strand, within GFF4420 at 56.409 kb on + strand, within GFF4420 at 56.409 kb on + strand, within GFF4420 at 56.409 kb on + strand, within GFF4420 at 56.410 kb on - strand, within GFF4420 at 56.410 kb on - strand, within GFF4420 at 56.410 kb on - strand, within GFF4420 at 56.427 kb on + strand, within GFF4420 at 56.427 kb on + strand, within GFF4420 at 56.427 kb on + strand, within GFF4420 at 56.427 kb on + strand, within GFF4420 at 56.427 kb on + strand, within GFF4420 at 56.427 kb on + strand, within GFF4420 at 56.427 kb on + strand, within GFF4420 at 56.427 kb on + strand, within GFF4420 at 56.428 kb on - strand, within GFF4420 at 56.428 kb on - strand, within GFF4420 at 56.428 kb on - strand, within GFF4420 at 56.428 kb on - strand, within GFF4420 at 56.428 kb on - strand, within GFF4420 at 56.428 kb on - strand, within GFF4420 at 56.428 kb on - strand, within GFF4420 at 56.428 kb on - strand, within GFF4420 at 56.428 kb on - strand, within GFF4420 at 56.428 kb on - strand, within GFF4420 at 56.560 kb on + strand, within GFF4420 at 56.560 kb on + strand, within GFF4420 at 56.560 kb on + strand, within GFF4420 at 56.560 kb on + strand, within GFF4420 at 56.560 kb on + strand, within GFF4420 at 56.560 kb on + strand, within GFF4420 at 56.561 kb on - strand, within GFF4420 at 56.561 kb on - strand, within GFF4420 at 56.860 kb on + strand, within GFF4420 at 56.860 kb on + strand, within GFF4420 at 56.860 kb on + strand, within GFF4420 at 56.861 kb on - strand, within GFF4420 at 56.861 kb on - strand, within GFF4420
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 54,161 + GFF4417 0.60 -0.8 54,161 + GFF4417 0.60 -0.5 54,162 - GFF4417 0.60 +0.0 54,162 - GFF4417 0.60 -4.1 54,162 - GFF4417 0.60 +0.0 54,162 - GFF4417 0.60 +1.0 54,225 - GFF4417 0.62 -1.7 54,261 + GFF4417 0.64 -0.2 54,261 + GFF4417 0.64 +0.5 54,261 + GFF4417 0.64 +1.1 54,261 + GFF4417 0.64 -1.6 54,261 + GFF4417 0.64 +0.6 54,261 + GFF4417 0.64 -0.2 54,261 + GFF4417 0.64 -1.1 54,261 + GFF4417 0.64 -0.4 54,261 + GFF4417 0.64 +0.6 54,261 + GFF4417 0.64 -1.3 54,264 + GFF4417 0.64 -1.4 54,264 + GFF4417 0.64 -1.6 54,264 + GFF4417 0.64 -1.9 54,264 + GFF4417 0.64 -2.1 54,264 + GFF4417 0.64 +0.8 54,264 + GFF4417 0.64 -0.2 54,265 - GFF4417 0.64 +1.3 54,265 - GFF4417 0.64 +2.7 54,265 - GFF4417 0.64 +0.5 54,276 + GFF4417 0.64 -3.9 54,276 + GFF4417 0.64 -2.7 54,276 + GFF4417 0.64 +0.8 54,276 + GFF4417 0.64 +0.9 54,276 + GFF4417 0.64 +0.0 54,276 + GFF4417 0.64 -0.8 54,276 + GFF4417 0.64 -0.5 54,277 - GFF4417 0.64 +0.1 54,277 - GFF4417 0.64 -0.3 54,277 - GFF4417 0.64 +0.3 54,277 - GFF4417 0.64 +0.6 54,413 + GFF4417 0.70 -0.2 54,413 + GFF4417 0.70 -4.0 54,414 - GFF4417 0.70 +1.8 54,414 - GFF4417 0.70 -0.2 54,414 - GFF4417 0.70 -1.0 54,414 - GFF4417 0.70 -1.1 54,414 - GFF4417 0.70 -0.6 54,414 - GFF4417 0.70 -0.7 54,414 - GFF4417 0.70 +1.5 54,414 - GFF4417 0.70 -0.9 54,414 - GFF4417 0.70 +1.1 54,414 - GFF4417 0.70 +0.0 54,542 + GFF4417 0.75 +3.6 54,542 + GFF4417 0.75 +0.0 54,542 + GFF4417 0.75 -1.7 54,542 + GFF4417 0.75 -1.4 54,542 + GFF4417 0.75 +2.3 54,542 + GFF4417 0.75 +0.6 54,542 + GFF4417 0.75 -2.2 54,542 + GFF4417 0.75 -1.6 54,542 + GFF4417 0.75 -0.2 54,542 + GFF4417 0.75 +1.1 54,542 + GFF4417 0.75 +0.6 54,542 + GFF4417 0.75 -0.6 54,542 + GFF4417 0.75 +0.0 54,542 + GFF4417 0.75 -0.2 54,589 - GFF4417 0.77 +0.1 54,589 - GFF4417 0.77 -1.4 54,589 - GFF4417 0.77 -2.1 54,593 - GFF4417 0.77 +0.9 54,815 + GFF4417 0.86 +0.8 54,815 + GFF4417 0.86 +0.0 54,815 + GFF4417 0.86 -0.7 54,815 + GFF4417 0.86 -0.5 54,815 + GFF4417 0.86 -2.5 54,815 + GFF4417 0.86 +0.8 54,881 + GFF4417 0.89 -0.6 54,881 + GFF4417 0.89 +1.5 54,881 + GFF4417 0.89 -0.1 54,881 + GFF4417 0.89 +1.2 54,881 + GFF4417 0.89 -0.9 54,881 + GFF4417 0.89 +0.3 54,881 + GFF4417 0.89 +0.3 54,882 - GFF4417 0.89 -1.7 54,882 - GFF4417 0.89 -0.7 54,882 - GFF4417 0.89 +1.0 54,882 - GFF4417 0.89 -0.9 54,882 - GFF4417 0.89 +2.3 54,882 - GFF4417 0.89 +0.9 54,882 - GFF4417 0.89 -0.1 55,002 + -0.1 55,003 - -0.9 55,164 + +0.3 55,164 + -0.7 55,165 - -1.1 55,165 - -0.8 55,468 + GFF4418 0.42 +0.8 55,468 + GFF4418 0.42 +0.1 55,468 + GFF4418 0.42 -0.7 55,468 + GFF4418 0.42 +0.4 55,468 + GFF4418 0.42 +2.9 55,508 - GFF4418 0.47 -0.1 55,519 + GFF4418 0.48 -1.7 55,519 + GFF4418 0.48 +0.6 55,519 + GFF4418 0.48 -0.5 55,519 + GFF4418 0.48 +1.6 55,519 + GFF4418 0.48 +0.3 55,520 - GFF4418 0.49 -1.4 55,520 - GFF4418 0.49 -1.4 55,520 - GFF4418 0.49 +0.2 55,520 - GFF4418 0.49 -0.5 55,520 - GFF4418 0.49 -0.8 55,520 - GFF4418 0.49 -3.7 55,520 - GFF4418 0.49 -2.1 55,549 + GFF4418 0.52 -1.5 55,549 + GFF4418 0.52 +1.7 55,549 + GFF4418 0.52 +1.6 55,549 + GFF4418 0.52 -1.0 55,549 + GFF4418 0.52 +0.8 55,549 + GFF4418 0.52 +2.3 55,549 + GFF4418 0.52 +1.5 55,549 + GFF4418 0.52 -0.8 55,550 - GFF4418 0.53 +0.2 55,550 - GFF4418 0.53 -0.8 55,550 - GFF4418 0.53 -0.2 55,550 - GFF4418 0.53 -2.3 55,550 - GFF4418 0.53 +1.9 55,550 - GFF4418 0.53 -3.0 55,550 - GFF4418 0.53 +2.0 55,550 - GFF4418 0.53 +0.4 55,550 - GFF4418 0.53 -0.9 55,550 - GFF4418 0.53 -2.1 55,550 - GFF4418 0.53 -3.8 55,550 - GFF4418 0.53 -1.7 55,550 - GFF4418 0.53 -2.7 55,550 - GFF4418 0.53 -0.7 55,550 - GFF4418 0.53 +0.9 55,733 + GFF4418 0.77 -3.1 55,733 + GFF4418 0.77 -1.6 55,734 - GFF4418 0.77 +1.2 55,766 + GFF4418 0.81 -1.5 55,767 - GFF4418 0.81 -2.5 55,873 + +1.1 55,873 + -1.1 55,873 + -0.7 55,873 + +2.3 55,874 - -1.8 55,874 - +0.8 55,897 + -1.2 55,897 + -2.1 55,898 - -0.6 56,141 - GFF4419 0.77 -1.2 56,246 + -0.2 56,246 + +1.5 56,246 + -0.7 56,246 + +1.1 56,246 + -0.7 56,246 + -1.2 56,246 + +0.5 56,247 - +1.3 56,247 - +1.0 56,250 + -1.9 56,250 + +0.2 56,250 + -1.7 56,250 + -1.2 56,250 + -1.5 56,250 + +1.7 56,250 + -1.7 56,250 + -1.2 56,250 + +0.9 56,250 + -2.4 56,251 - -0.1 56,251 - -0.6 56,251 - -0.7 56,251 - +1.1 56,251 - +0.0 56,251 - +1.2 56,251 - -0.7 56,251 - +0.1 56,251 - -0.6 56,251 - -2.0 56,340 + GFF4420 0.10 -1.5 56,340 + GFF4420 0.10 -2.5 56,340 + GFF4420 0.10 -1.4 56,340 + GFF4420 0.10 -2.2 56,340 + GFF4420 0.10 +0.5 56,340 + GFF4420 0.10 +2.0 56,341 - GFF4420 0.10 -0.5 56,341 - GFF4420 0.10 +1.1 56,341 - GFF4420 0.10 -0.2 56,409 + GFF4420 0.15 -1.2 56,409 + GFF4420 0.15 -0.8 56,409 + GFF4420 0.15 +1.3 56,409 + GFF4420 0.15 -1.5 56,409 + GFF4420 0.15 -1.7 56,409 + GFF4420 0.15 -0.7 56,409 + GFF4420 0.15 -2.6 56,410 - GFF4420 0.15 -1.8 56,410 - GFF4420 0.15 -0.9 56,410 - GFF4420 0.15 -0.7 56,427 + GFF4420 0.16 -2.1 56,427 + GFF4420 0.16 -1.9 56,427 + GFF4420 0.16 -1.2 56,427 + GFF4420 0.16 -1.1 56,427 + GFF4420 0.16 -0.7 56,427 + GFF4420 0.16 +1.8 56,427 + GFF4420 0.16 -1.4 56,427 + GFF4420 0.16 +0.8 56,428 - GFF4420 0.16 +0.0 56,428 - GFF4420 0.16 -0.2 56,428 - GFF4420 0.16 -0.4 56,428 - GFF4420 0.16 -1.7 56,428 - GFF4420 0.16 +0.1 56,428 - GFF4420 0.16 -1.4 56,428 - GFF4420 0.16 -2.3 56,428 - GFF4420 0.16 -0.1 56,428 - GFF4420 0.16 -1.7 56,428 - GFF4420 0.16 +0.9 56,560 + GFF4420 0.26 +2.0 56,560 + GFF4420 0.26 -1.0 56,560 + GFF4420 0.26 -1.0 56,560 + GFF4420 0.26 -3.0 56,560 + GFF4420 0.26 +0.8 56,560 + GFF4420 0.26 -1.1 56,561 - GFF4420 0.26 +1.3 56,561 - GFF4420 0.26 +0.2 56,860 + GFF4420 0.48 +4.7 56,860 + GFF4420 0.48 -0.2 56,860 + GFF4420 0.48 +2.0 56,861 - GFF4420 0.48 -3.2 56,861 - GFF4420 0.48 -0.2
Or see this region's nucleotide sequence