Strain Fitness in Variovorax sp. SCN45 around GFF4345

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4344 and GFF4345 are separated by 24 nucleotidesGFF4345 and GFF4346 are separated by 175 nucleotides GFF4344 - acyl-CoA dehydrogenase, putative phosphotransferase, at 267,287 to 268,339 GFF4344 GFF4345 - hypothetical protein, at 268,364 to 269,029 GFF4345 GFF4346 - no description, at 269,205 to 270,071 GFF4346 Position (kb) 268 269 270Strain fitness (log2 ratio) -2 -1 0 1 2 3at 267.617 kb on + strand, within GFF4344at 268.127 kb on + strand, within GFF4344at 268.128 kb on - strand, within GFF4344at 268.139 kb on + strand, within GFF4344at 268.357 kb on - strandat 268.555 kb on - strand, within GFF4345at 268.710 kb on - strand, within GFF4345at 268.713 kb on + strand, within GFF4345at 268.713 kb on + strand, within GFF4345at 268.806 kb on - strand, within GFF4345at 269.443 kb on + strand, within GFF4346at 269.512 kb on - strand, within GFF4346

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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267,617 + GFF4344 0.31 -0.6
268,127 + GFF4344 0.80 -1.4
268,128 - GFF4344 0.80 -1.8
268,139 + GFF4344 0.81 +0.3
268,357 - +0.7
268,555 - GFF4345 0.29 +0.0
268,710 - GFF4345 0.52 +0.0
268,713 + GFF4345 0.52 -0.1
268,713 + GFF4345 0.52 +3.5
268,806 - GFF4345 0.66 -2.7
269,443 + GFF4346 0.27 +0.0
269,512 - GFF4346 0.35 -0.8

Or see this region's nucleotide sequence