Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4314 and GFF4315 overlap by 4 nucleotides GFF4315 and GFF4316 overlap by 4 nucleotides GFF4316 and GFF4317 are separated by 4 nucleotides GFF4317 and GFF4318 are separated by 21 nucleotides
GFF4314 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 234,859 to 235,662
GFF4314
GFF4315 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 235,659 to 236,528
GFF4315
GFF4316 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 236,525 to 238,327
GFF4316
GFF4317 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 238,332 to 239,210
GFF4317
GFF4318 - no description, at 239,232 to 240,428
GFF4318
Position (kb) 236
237
238
239 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 235.601 kb on + strand at 235.754 kb on - strand, within GFF4315 at 235.831 kb on + strand, within GFF4315 at 236.417 kb on - strand, within GFF4315 at 236.489 kb on + strand at 236.490 kb on - strand at 236.490 kb on - strand at 236.559 kb on + strand at 236.560 kb on - strand at 236.560 kb on - strand at 236.560 kb on - strand at 236.681 kb on + strand at 236.682 kb on - strand at 237.284 kb on + strand, within GFF4316 at 237.615 kb on + strand, within GFF4316 at 237.616 kb on - strand, within GFF4316 at 237.810 kb on + strand, within GFF4316 at 237.810 kb on + strand, within GFF4316 at 237.810 kb on + strand, within GFF4316 at 237.811 kb on - strand, within GFF4316 at 238.080 kb on + strand, within GFF4316 at 238.080 kb on + strand, within GFF4316 at 238.081 kb on - strand, within GFF4316 at 238.333 kb on + strand at 238.786 kb on + strand, within GFF4317 at 239.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 235,601 + +0.9 235,754 - GFF4315 0.11 -2.9 235,831 + GFF4315 0.20 -0.3 236,417 - GFF4315 0.87 +0.7 236,489 + +0.0 236,490 - -1.8 236,490 - +0.3 236,559 + +0.5 236,560 - +0.6 236,560 - -0.5 236,560 - -1.7 236,681 + +1.0 236,682 - +0.5 237,284 + GFF4316 0.42 -1.0 237,615 + GFF4316 0.60 -0.3 237,616 - GFF4316 0.61 +0.6 237,810 + GFF4316 0.71 -2.1 237,810 + GFF4316 0.71 +0.5 237,810 + GFF4316 0.71 +1.4 237,811 - GFF4316 0.71 -1.6 238,080 + GFF4316 0.86 -0.8 238,080 + GFF4316 0.86 -1.6 238,081 - GFF4316 0.86 -0.5 238,333 + +1.0 238,786 + GFF4317 0.52 -0.2 239,164 + -0.8
Or see this region's nucleotide sequence