Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4277 and GFF4278 are separated by 30 nucleotides GFF4278 and GFF4279 are separated by 2 nucleotides GFF4279 and GFF4280 are separated by 34 nucleotides
GFF4277 - Small subunit naph/bph dioxygenase, at 197,023 to 197,607
GFF4277
GFF4278 - Putative short-chain dehydrogenase, at 197,638 to 198,438
GFF4278
GFF4279 - 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-), at 198,441 to 199,808
GFF4279
GFF4280 - oxidoreductase FAD/NAD(P)-binding domain protein, at 199,843 to 200,838
GFF4280
Position (kb) 198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 197.544 kb on - strand, within GFF4277 at 197.621 kb on - strand at 197.902 kb on + strand, within GFF4278 at 197.972 kb on + strand, within GFF4278 at 197.973 kb on - strand, within GFF4278 at 197.973 kb on - strand, within GFF4278 at 197.973 kb on - strand, within GFF4278 at 198.077 kb on + strand, within GFF4278 at 198.077 kb on + strand, within GFF4278 at 198.077 kb on + strand, within GFF4278 at 198.077 kb on + strand, within GFF4278 at 198.077 kb on + strand, within GFF4278 at 198.078 kb on - strand, within GFF4278 at 198.078 kb on - strand, within GFF4278 at 198.078 kb on - strand, within GFF4278 at 198.511 kb on + strand at 198.512 kb on - strand at 198.512 kb on - strand at 198.529 kb on + strand at 198.529 kb on + strand at 198.619 kb on + strand, within GFF4279 at 198.619 kb on + strand, within GFF4279 at 198.620 kb on - strand, within GFF4279 at 198.626 kb on - strand, within GFF4279 at 198.670 kb on + strand, within GFF4279 at 198.730 kb on + strand, within GFF4279 at 198.730 kb on + strand, within GFF4279 at 198.730 kb on + strand, within GFF4279 at 198.730 kb on + strand, within GFF4279 at 198.730 kb on + strand, within GFF4279 at 198.730 kb on + strand, within GFF4279 at 198.730 kb on + strand, within GFF4279 at 198.730 kb on + strand, within GFF4279 at 198.731 kb on - strand, within GFF4279 at 198.731 kb on - strand, within GFF4279 at 198.731 kb on - strand, within GFF4279 at 198.731 kb on - strand, within GFF4279 at 198.733 kb on + strand, within GFF4279 at 198.733 kb on + strand, within GFF4279 at 198.733 kb on + strand, within GFF4279 at 198.734 kb on - strand, within GFF4279 at 198.734 kb on - strand, within GFF4279 at 198.734 kb on - strand, within GFF4279 at 198.734 kb on - strand, within GFF4279 at 198.955 kb on + strand, within GFF4279 at 198.955 kb on + strand, within GFF4279 at 198.956 kb on - strand, within GFF4279 at 198.982 kb on + strand, within GFF4279 at 198.983 kb on - strand, within GFF4279 at 199.162 kb on + strand, within GFF4279 at 199.162 kb on + strand, within GFF4279 at 199.163 kb on - strand, within GFF4279 at 199.163 kb on - strand, within GFF4279 at 199.163 kb on - strand, within GFF4279 at 199.309 kb on + strand, within GFF4279 at 199.310 kb on - strand, within GFF4279 at 199.363 kb on + strand, within GFF4279 at 199.363 kb on + strand, within GFF4279 at 199.363 kb on + strand, within GFF4279 at 199.363 kb on + strand, within GFF4279 at 199.364 kb on - strand, within GFF4279 at 199.471 kb on + strand, within GFF4279 at 199.471 kb on + strand, within GFF4279 at 199.472 kb on - strand, within GFF4279 at 199.472 kb on - strand, within GFF4279 at 199.522 kb on + strand, within GFF4279 at 199.523 kb on - strand, within GFF4279 at 199.534 kb on + strand, within GFF4279 at 199.780 kb on + strand at 199.991 kb on + strand, within GFF4280 at 199.991 kb on + strand, within GFF4280 at 199.991 kb on + strand, within GFF4280 at 199.992 kb on - strand, within GFF4280 at 200.389 kb on - strand, within GFF4280 at 200.417 kb on + strand, within GFF4280 at 200.649 kb on - strand, within GFF4280
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 197,544 - GFF4277 0.89 +0.0 197,621 - +2.5 197,902 + GFF4278 0.33 -2.8 197,972 + GFF4278 0.42 -0.7 197,973 - GFF4278 0.42 +0.8 197,973 - GFF4278 0.42 +0.0 197,973 - GFF4278 0.42 -0.5 198,077 + GFF4278 0.55 -1.6 198,077 + GFF4278 0.55 -1.1 198,077 + GFF4278 0.55 +0.0 198,077 + GFF4278 0.55 -3.1 198,077 + GFF4278 0.55 -0.3 198,078 - GFF4278 0.55 +0.7 198,078 - GFF4278 0.55 -0.7 198,078 - GFF4278 0.55 +0.5 198,511 + +0.3 198,512 - -0.4 198,512 - -1.1 198,529 + +1.3 198,529 + +2.7 198,619 + GFF4279 0.13 -0.1 198,619 + GFF4279 0.13 -1.6 198,620 - GFF4279 0.13 +0.2 198,626 - GFF4279 0.14 +1.0 198,670 + GFF4279 0.17 +0.7 198,730 + GFF4279 0.21 -1.0 198,730 + GFF4279 0.21 -1.1 198,730 + GFF4279 0.21 +0.2 198,730 + GFF4279 0.21 -0.8 198,730 + GFF4279 0.21 +1.3 198,730 + GFF4279 0.21 +1.4 198,730 + GFF4279 0.21 +2.3 198,730 + GFF4279 0.21 -0.7 198,731 - GFF4279 0.21 +0.3 198,731 - GFF4279 0.21 +1.2 198,731 - GFF4279 0.21 +1.3 198,731 - GFF4279 0.21 -1.7 198,733 + GFF4279 0.21 -2.6 198,733 + GFF4279 0.21 +1.3 198,733 + GFF4279 0.21 -2.7 198,734 - GFF4279 0.21 -0.3 198,734 - GFF4279 0.21 -3.4 198,734 - GFF4279 0.21 +0.6 198,734 - GFF4279 0.21 +0.0 198,955 + GFF4279 0.38 -3.7 198,955 + GFF4279 0.38 +0.0 198,956 - GFF4279 0.38 +1.1 198,982 + GFF4279 0.40 -1.1 198,983 - GFF4279 0.40 +1.0 199,162 + GFF4279 0.53 -0.6 199,162 + GFF4279 0.53 +1.3 199,163 - GFF4279 0.53 +1.6 199,163 - GFF4279 0.53 +1.7 199,163 - GFF4279 0.53 -2.2 199,309 + GFF4279 0.63 +1.3 199,310 - GFF4279 0.64 -1.5 199,363 + GFF4279 0.67 -0.3 199,363 + GFF4279 0.67 -0.6 199,363 + GFF4279 0.67 +2.5 199,363 + GFF4279 0.67 -0.7 199,364 - GFF4279 0.67 +0.6 199,471 + GFF4279 0.75 +0.0 199,471 + GFF4279 0.75 -1.3 199,472 - GFF4279 0.75 -0.6 199,472 - GFF4279 0.75 +0.3 199,522 + GFF4279 0.79 -0.5 199,523 - GFF4279 0.79 +1.6 199,534 + GFF4279 0.80 +1.3 199,780 + -0.2 199,991 + GFF4280 0.15 +1.9 199,991 + GFF4280 0.15 +0.5 199,991 + GFF4280 0.15 -0.1 199,992 - GFF4280 0.15 +1.3 200,389 - GFF4280 0.55 +0.9 200,417 + GFF4280 0.58 +0.0 200,649 - GFF4280 0.81 +0.3
Or see this region's nucleotide sequence