Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4241 and GFF4242 overlap by 4 nucleotides GFF4242 and GFF4243 are separated by 660 nucleotides GFF4243 and GFF4244 are separated by 15 nucleotides
GFF4241 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 152,875 to 155,901
GFF4241
GFF4242 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 155,898 to 156,944
GFF4242
GFF4243 - no description, at 157,605 to 157,730
GFF4243
GFF4244 - Acid phosphatase (EC 3.1.3.2), at 157,746 to 160,196
GFF4244
Position (kb) 155
156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 155.861 kb on + strand at 155.861 kb on + strand at 155.862 kb on - strand at 155.862 kb on - strand at 156.268 kb on + strand, within GFF4242 at 156.268 kb on + strand, within GFF4242 at 156.268 kb on + strand, within GFF4242 at 156.268 kb on + strand, within GFF4242 at 156.268 kb on + strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.383 kb on - strand, within GFF4242 at 156.383 kb on - strand, within GFF4242 at 156.383 kb on - strand, within GFF4242 at 156.383 kb on - strand, within GFF4242 at 156.508 kb on + strand, within GFF4242 at 156.509 kb on - strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.539 kb on - strand, within GFF4242 at 156.566 kb on - strand, within GFF4242 at 156.566 kb on - strand, within GFF4242 at 156.649 kb on + strand, within GFF4242 at 156.770 kb on - strand, within GFF4242 at 156.829 kb on + strand, within GFF4242 at 156.829 kb on + strand, within GFF4242 at 156.830 kb on - strand, within GFF4242 at 156.830 kb on - strand, within GFF4242 at 156.830 kb on - strand, within GFF4242 at 156.830 kb on - strand, within GFF4242 at 156.934 kb on + strand at 156.935 kb on - strand at 156.935 kb on - strand at 156.935 kb on - strand at 156.935 kb on - strand at 156.935 kb on - strand at 156.944 kb on + strand at 156.944 kb on + strand at 156.944 kb on + strand at 156.944 kb on + strand at 156.944 kb on + strand at 156.945 kb on - strand at 156.945 kb on - strand at 156.945 kb on - strand at 156.974 kb on + strand at 156.974 kb on + strand at 156.974 kb on + strand at 156.974 kb on + strand at 156.974 kb on + strand at 156.974 kb on + strand at 156.974 kb on + strand at 156.975 kb on - strand at 156.975 kb on - strand at 156.975 kb on - strand at 156.975 kb on - strand at 156.985 kb on + strand at 156.985 kb on + strand at 156.986 kb on - strand at 156.986 kb on - strand at 156.986 kb on - strand at 156.986 kb on - strand at 157.037 kb on + strand at 157.037 kb on + strand at 157.037 kb on + strand at 157.038 kb on - strand at 157.038 kb on - strand at 157.038 kb on - strand at 157.315 kb on + strand at 157.407 kb on + strand at 157.407 kb on + strand at 157.408 kb on - strand at 157.408 kb on - strand at 157.413 kb on - strand at 157.414 kb on + strand at 157.479 kb on - strand at 157.493 kb on + strand at 157.504 kb on + strand at 157.505 kb on - strand at 157.505 kb on - strand at 157.505 kb on - strand at 157.505 kb on - strand at 157.509 kb on - strand at 157.516 kb on - strand at 157.539 kb on - strand at 157.723 kb on + strand at 157.724 kb on - strand at 157.724 kb on - strand at 157.741 kb on + strand at 157.741 kb on + strand at 157.742 kb on - strand at 157.742 kb on - strand at 157.742 kb on - strand at 157.742 kb on - strand at 157.742 kb on - strand at 157.743 kb on + strand at 157.743 kb on + strand at 157.744 kb on - strand at 157.744 kb on - strand at 157.744 kb on - strand at 157.744 kb on - strand at 157.745 kb on + strand at 157.745 kb on + strand at 157.745 kb on + strand at 157.745 kb on + strand at 157.745 kb on + strand at 157.745 kb on + strand at 157.745 kb on + strand at 157.746 kb on - strand at 157.746 kb on - strand at 157.746 kb on - strand at 157.746 kb on - strand at 157.746 kb on - strand at 157.746 kb on - strand at 157.746 kb on - strand at 157.775 kb on + strand at 157.775 kb on + strand at 157.775 kb on + strand at 157.775 kb on + strand at 157.776 kb on - strand at 157.776 kb on - strand at 157.776 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 155,861 + +3.1 155,861 + -1.6 155,862 - -1.8 155,862 - +1.3 156,268 + GFF4242 0.35 +0.7 156,268 + GFF4242 0.35 -0.3 156,268 + GFF4242 0.35 -3.2 156,268 + GFF4242 0.35 +1.2 156,268 + GFF4242 0.35 +3.1 156,269 - GFF4242 0.35 -3.1 156,269 - GFF4242 0.35 -1.6 156,269 - GFF4242 0.35 +2.0 156,269 - GFF4242 0.35 +2.3 156,269 - GFF4242 0.35 -0.3 156,383 - GFF4242 0.46 +2.3 156,383 - GFF4242 0.46 -1.0 156,383 - GFF4242 0.46 +0.7 156,383 - GFF4242 0.46 +2.3 156,508 + GFF4242 0.58 +2.3 156,509 - GFF4242 0.58 +0.7 156,514 + GFF4242 0.59 +0.4 156,514 + GFF4242 0.59 -0.3 156,514 + GFF4242 0.59 -1.1 156,514 + GFF4242 0.59 +1.3 156,514 + GFF4242 0.59 -1.8 156,514 + GFF4242 0.59 -0.5 156,514 + GFF4242 0.59 +1.3 156,514 + GFF4242 0.59 +1.3 156,514 + GFF4242 0.59 +1.7 156,514 + GFF4242 0.59 -0.3 156,514 + GFF4242 0.59 +2.3 156,514 + GFF4242 0.59 +2.3 156,514 + GFF4242 0.59 +2.3 156,514 + GFF4242 0.59 +0.8 156,514 + GFF4242 0.59 -2.1 156,514 + GFF4242 0.59 +1.3 156,514 + GFF4242 0.59 +0.3 156,514 + GFF4242 0.59 +2.1 156,515 - GFF4242 0.59 +0.7 156,515 - GFF4242 0.59 -2.0 156,515 - GFF4242 0.59 -2.2 156,515 - GFF4242 0.59 +2.3 156,515 - GFF4242 0.59 +0.7 156,515 - GFF4242 0.59 -3.6 156,515 - GFF4242 0.59 +0.7 156,515 - GFF4242 0.59 -0.5 156,515 - GFF4242 0.59 +0.0 156,515 - GFF4242 0.59 -0.5 156,515 - GFF4242 0.59 -0.5 156,515 - GFF4242 0.59 +0.7 156,515 - GFF4242 0.59 -0.7 156,515 - GFF4242 0.59 +1.3 156,515 - GFF4242 0.59 -1.2 156,539 - GFF4242 0.61 +1.9 156,566 - GFF4242 0.64 +2.3 156,566 - GFF4242 0.64 -1.4 156,649 + GFF4242 0.72 +0.2 156,770 - GFF4242 0.83 +1.6 156,829 + GFF4242 0.89 -1.0 156,829 + GFF4242 0.89 -3.5 156,830 - GFF4242 0.89 -0.3 156,830 - GFF4242 0.89 -3.1 156,830 - GFF4242 0.89 +1.2 156,830 - GFF4242 0.89 +0.9 156,934 + +0.6 156,935 - +1.4 156,935 - +0.6 156,935 - +2.0 156,935 - -2.1 156,935 - -1.0 156,944 + +0.7 156,944 + +0.0 156,944 + +1.3 156,944 + -1.9 156,944 + +2.3 156,945 - -0.7 156,945 - -1.7 156,945 - +0.5 156,974 + +0.0 156,974 + +2.3 156,974 + -1.0 156,974 + +2.3 156,974 + +0.7 156,974 + +1.5 156,974 + +1.9 156,975 - +2.3 156,975 - -1.3 156,975 - +2.3 156,975 - +2.3 156,985 + -0.8 156,985 + +0.0 156,986 - +1.0 156,986 - -1.0 156,986 - +2.3 156,986 - +0.3 157,037 + +2.3 157,037 + +0.3 157,037 + +1.3 157,038 - +2.2 157,038 - -0.7 157,038 - -1.2 157,315 + -0.7 157,407 + +0.3 157,407 + -0.4 157,408 - -2.2 157,408 - -1.8 157,413 - -0.5 157,414 + -0.6 157,479 - -2.9 157,493 + -0.3 157,504 + -0.7 157,505 - -1.1 157,505 - +0.7 157,505 - -0.8 157,505 - +0.2 157,509 - -3.5 157,516 - -1.3 157,539 - -1.3 157,723 + +1.1 157,724 - +0.2 157,724 - +2.3 157,741 + +0.3 157,741 + -2.6 157,742 - +0.0 157,742 - -1.8 157,742 - +0.7 157,742 - -0.3 157,742 - -0.3 157,743 + -1.7 157,743 + +1.6 157,744 - +0.7 157,744 - -0.7 157,744 - -2.0 157,744 - +0.0 157,745 + -1.4 157,745 + -0.8 157,745 + +1.2 157,745 + -0.4 157,745 + -0.4 157,745 + -0.3 157,745 + +0.2 157,746 - +0.5 157,746 - -0.9 157,746 - -2.3 157,746 - -2.3 157,746 - +0.3 157,746 - -0.3 157,746 - +0.4 157,775 + -1.7 157,775 + -0.3 157,775 + +1.6 157,775 + +0.3 157,776 - -1.3 157,776 - +0.4 157,776 - -0.8
Or see this region's nucleotide sequence