Strain Fitness in Variovorax sp. SCN45 around GFF4180

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
82,989	+				-1.0
82,989	+				-0.6
83,089	-				-2.3
83,089	-				+0.3
83,214	+		GFF4179	0.21	+0.5
83,216	+		GFF4179	0.21	-4.8
83,216	+		GFF4179	0.21	-0.1
83,216	+		GFF4179	0.21	+0.2
83,217	-		GFF4179	0.21	+0.0
83,361	+		GFF4179	0.45	+0.9
83,361	+		GFF4179	0.45	-0.2
83,361	+		GFF4179	0.45	-0.5
83,412	+		GFF4179	0.54	-0.5
83,412	+		GFF4179	0.54	-2.3
83,451	+		GFF4179	0.60	-0.3
83,452	-		GFF4179	0.60	+1.1
83,460	+		GFF4179	0.62	-0.5
83,460	+		GFF4179	0.62	+0.3
83,461	-		GFF4179	0.62	-2.1
83,500	-		GFF4179	0.68	+1.3
83,514	+		GFF4179	0.70	-2.6
83,514	+		GFF4179	0.70	-1.9
83,514	+		GFF4179	0.70	-0.6
83,515	-		GFF4179	0.71	-2.0
83,613	+		GFF4179	0.87	+1.0
83,613	+		GFF4179	0.87	-1.5
83,613	+		GFF4179	0.87	-0.5
83,613	+		GFF4179	0.87	-1.1
83,613	+		GFF4179	0.87	-0.7
83,613	+		GFF4179	0.87	+0.9
83,613	+		GFF4179	0.87	-0.8
83,614	-		GFF4179	0.87	-0.7
83,614	-		GFF4179	0.87	-0.5
83,614	-		GFF4179	0.87	-0.3
83,634	+				-3.4
83,634	+				-1.1
83,634	+				-0.7
83,634	+				-1.8
83,634	+				-3.2
83,634	+				-0.1
83,635	-				+0.2
83,635	-				+0.8
83,635	-				+0.3
83,635	-				-3.3
83,635	-				+0.6
83,635	-				+1.8
83,674	+				+0.9
83,674	+				+0.7
83,675	-				-0.4
83,887	-				+2.2
83,963	+				+0.3
84,048	+				-1.4
84,048	+				+0.8
84,049	-				+0.2
84,049	-				-0.9
84,064	+				-1.5
84,250	+		GFF4180	0.16	-0.6
84,250	+		GFF4180	0.16	-0.2
84,251	-		GFF4180	0.16	+0.6
84,251	-		GFF4180	0.16	-0.7
84,569	+		GFF4180	0.29	+2.9
84,569	+		GFF4180	0.29	-0.8
84,612	+		GFF4180	0.31	-0.8
84,612	+		GFF4180	0.31	+1.3
84,612	+		GFF4180	0.31	-2.4
84,612	+		GFF4180	0.31	+0.6
84,612	+		GFF4180	0.31	+0.0
84,612	+		GFF4180	0.31	-0.7
84,612	+		GFF4180	0.31	+1.9
84,613	-		GFF4180	0.31	-2.0
84,613	-		GFF4180	0.31	-0.4
84,613	-		GFF4180	0.31	-2.8
84,613	-		GFF4180	0.31	+0.1
84,613	-		GFF4180	0.31	-1.2
84,613	-		GFF4180	0.31	+0.3
84,822	+		GFF4180	0.40	-0.7
84,822	+		GFF4180	0.40	+0.2
84,822	+		GFF4180	0.40	-0.5
84,823	-		GFF4180	0.40	+1.8
84,964	+		GFF4180	0.46	+2.6
84,965	-		GFF4180	0.46	-1.9
84,965	-		GFF4180	0.46	+2.1
85,081	+		GFF4180	0.51	-1.1
85,368	+		GFF4180	0.63	+1.8
85,902	+		GFF4180	0.86	-0.6
85,902	+		GFF4180	0.86	+0.7
85,903	-		GFF4180	0.86	+2.9
85,903	-		GFF4180	0.86	-2.2
85,903	-		GFF4180	0.86	+0.7
85,989	-		GFF4180	0.90	+1.2
86,114	+				-0.5
86,114	+				-0.4
86,114	+				-0.7
86,114	+				-0.4
86,114	+				+2.3
86,114	+				-2.6
86,115	-				-0.2
86,115	-				+1.2
86,115	-				+0.7
86,215	+				-0.2
86,215	+				-0.8
86,254	+				+2.0
86,254	+				-2.9
86,254	+				+0.7
86,254	+				-0.7
86,254	+				+0.4
86,254	+				-2.4
86,254	+				-1.7
86,254	+				-0.9
86,255	-				-1.7
86,255	-				+0.6
86,258	+				+1.6
86,258	+				-0.7
86,354	-				+1.1
86,378	-				+1.6
86,378	-				-0.8
86,378	-				+0.3
86,378	-				-0.2
86,378	-				+0.3
86,391	+				-1.5
86,391	+				+1.2
86,392	-				-2.0
86,392	-				+0.1
86,392	-				+0.9
86,395	+				-0.3
87,024	+		GFF4181	0.59	+0.7
87,024	+		GFF4181	0.59	-0.8
87,024	+		GFF4181	0.59	+0.8
87,025	-		GFF4181	0.59	-0.7