Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4157 and GFF4158 are separated by 10 nucleotides GFF4158 and GFF4159 overlap by 4 nucleotides GFF4159 and GFF4160 overlap by 4 nucleotides GFF4160 and GFF4161 overlap by 17 nucleotides
GFF4157 - hypothetical protein, at 62,862 to 63,812
GFF4157
GFF4158 - hypothetical protein, at 63,823 to 64,251
GFF4158
GFF4159 - no description, at 64,248 to 64,967
GFF4159
GFF4160 - Demethylmenaquinone methyltransferase-like protein, at 64,964 to 65,719
GFF4160
GFF4161 - hypothetical protein, at 65,703 to 66,131
GFF4161
Position (kb) 64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 63.910 kb on + strand, within GFF4158 at 63.910 kb on + strand, within GFF4158 at 63.910 kb on + strand, within GFF4158 at 63.911 kb on - strand, within GFF4158 at 64.057 kb on + strand, within GFF4158 at 64.057 kb on + strand, within GFF4158 at 64.057 kb on + strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.561 kb on + strand, within GFF4159 at 64.562 kb on + strand, within GFF4159 at 64.563 kb on - strand, within GFF4159 at 64.563 kb on - strand, within GFF4159 at 65.069 kb on + strand, within GFF4160 at 65.070 kb on - strand, within GFF4160 at 65.126 kb on + strand, within GFF4160 at 65.126 kb on + strand, within GFF4160 at 65.177 kb on + strand, within GFF4160 at 65.178 kb on - strand, within GFF4160 at 65.474 kb on + strand, within GFF4160 at 65.474 kb on + strand, within GFF4160 at 65.475 kb on - strand, within GFF4160 at 65.475 kb on - strand, within GFF4160 at 65.574 kb on - strand, within GFF4160 at 65.574 kb on - strand, within GFF4160 at 65.657 kb on + strand at 65.814 kb on + strand, within GFF4161 at 65.922 kb on + strand, within GFF4161 at 65.923 kb on - strand, within GFF4161 at 65.941 kb on - strand, within GFF4161 at 65.941 kb on - strand, within GFF4161 at 65.947 kb on - strand, within GFF4161
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 63,910 + GFF4158 0.20 -0.7 63,910 + GFF4158 0.20 +0.0 63,910 + GFF4158 0.20 -2.9 63,911 - GFF4158 0.21 +0.9 64,057 + GFF4158 0.55 +3.3 64,057 + GFF4158 0.55 -0.4 64,057 + GFF4158 0.55 -0.7 64,058 - GFF4158 0.55 -0.4 64,058 - GFF4158 0.55 +0.3 64,058 - GFF4158 0.55 -0.1 64,058 - GFF4158 0.55 -2.1 64,058 - GFF4158 0.55 -2.4 64,058 - GFF4158 0.55 +0.2 64,561 + GFF4159 0.43 +1.0 64,562 + GFF4159 0.44 -0.9 64,563 - GFF4159 0.44 +0.8 64,563 - GFF4159 0.44 -2.3 65,069 + GFF4160 0.14 +2.1 65,070 - GFF4160 0.14 +2.6 65,126 + GFF4160 0.21 -2.0 65,126 + GFF4160 0.21 -2.2 65,177 + GFF4160 0.28 -1.9 65,178 - GFF4160 0.28 -1.9 65,474 + GFF4160 0.67 -0.4 65,474 + GFF4160 0.67 +2.3 65,475 - GFF4160 0.68 -1.8 65,475 - GFF4160 0.68 +0.0 65,574 - GFF4160 0.81 +1.9 65,574 - GFF4160 0.81 +2.2 65,657 + -0.0 65,814 + GFF4161 0.26 +1.1 65,922 + GFF4161 0.51 -3.1 65,923 - GFF4161 0.51 +2.5 65,941 - GFF4161 0.55 +1.4 65,941 - GFF4161 0.55 +0.3 65,947 - GFF4161 0.57 -0.5
Or see this region's nucleotide sequence