Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4089 and GFF4090 overlap by 1 nucleotides GFF4090 and GFF4091 are separated by 0 nucleotides GFF4091 and GFF4092 are separated by 59 nucleotides GFF4092 and GFF4093 are separated by 39 nucleotides
GFF4089 - Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4), at 301,874 to 302,611
GFF4089
GFF4090 - Glutamate/aspartate ABC transporter, permease protein GltK (TC 3.A.1.3.4), at 302,611 to 303,300
GFF4090
GFF4091 - Glutamate/aspartate ABC transporter, ATP-binding protein GltL (TC 3.A.1.3.4), at 303,301 to 304,044
GFF4091
GFF4092 - Copper tolerance protein, at 304,104 to 304,604
GFF4092
GFF4093 - no description, at 304,644 to 304,946
GFF4093
Position (kb) 303
304
305 Strain fitness (log2 ratio) -2
-1
0
1
2 at 302.477 kb on + strand, within GFF4089 at 302.525 kb on + strand, within GFF4089 at 302.525 kb on + strand, within GFF4089 at 302.525 kb on + strand, within GFF4089 at 302.525 kb on + strand, within GFF4089 at 302.540 kb on + strand at 302.541 kb on - strand at 302.789 kb on - strand, within GFF4090 at 302.905 kb on + strand, within GFF4090 at 302.905 kb on + strand, within GFF4090 at 302.906 kb on - strand, within GFF4090 at 302.944 kb on + strand, within GFF4090 at 302.947 kb on + strand, within GFF4090 at 303.206 kb on - strand, within GFF4090 at 303.206 kb on - strand, within GFF4090 at 303.206 kb on - strand, within GFF4090 at 303.340 kb on + strand at 303.341 kb on - strand at 303.496 kb on - strand, within GFF4091 at 303.525 kb on - strand, within GFF4091 at 304.283 kb on + strand, within GFF4092 at 304.284 kb on - strand, within GFF4092 at 304.455 kb on + strand, within GFF4092 at 304.551 kb on + strand, within GFF4092 at 304.646 kb on - strand at 304.655 kb on - strand at 304.814 kb on - strand, within GFF4093 at 304.828 kb on + strand, within GFF4093 at 304.906 kb on + strand, within GFF4093 at 304.907 kb on - strand, within GFF4093 at 304.935 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 302,477 + GFF4089 0.82 -0.6 302,525 + GFF4089 0.88 +0.3 302,525 + GFF4089 0.88 +0.7 302,525 + GFF4089 0.88 -0.5 302,525 + GFF4089 0.88 +2.7 302,540 + -2.3 302,541 - +1.4 302,789 - GFF4090 0.26 -1.2 302,905 + GFF4090 0.43 -0.7 302,905 + GFF4090 0.43 -2.1 302,906 - GFF4090 0.43 -0.5 302,944 + GFF4090 0.48 +0.5 302,947 + GFF4090 0.49 -2.0 303,206 - GFF4090 0.86 -1.4 303,206 - GFF4090 0.86 -0.2 303,206 - GFF4090 0.86 +0.4 303,340 + -0.8 303,341 - +1.6 303,496 - GFF4091 0.26 -0.8 303,525 - GFF4091 0.30 -1.4 304,283 + GFF4092 0.36 +1.9 304,284 - GFF4092 0.36 +0.0 304,455 + GFF4092 0.70 -2.4 304,551 + GFF4092 0.89 -0.7 304,646 - +0.5 304,655 - -1.2 304,814 - GFF4093 0.56 +0.2 304,828 + GFF4093 0.61 +1.4 304,906 + GFF4093 0.86 -0.5 304,907 - GFF4093 0.87 +1.1 304,935 - +0.6
Or see this region's nucleotide sequence