Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4079 and GFF4080 are separated by 117 nucleotides GFF4080 and GFF4081 are separated by 90 nucleotides GFF4081 and GFF4082 are separated by 99 nucleotides GFF4082 and GFF4083 are separated by 115 nucleotides
GFF4079 - Cytochrome c4, at 291,951 to 292,610
GFF4079
GFF4080 - no description, at 292,728 to 292,955
GFF4080
GFF4081 - Multicopper oxidase, at 293,046 to 295,061
GFF4081
GFF4082 - KEGG: copper chaperone, at 295,161 to 295,352
GFF4082
GFF4083 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 295,468 to 297,903
GFF4083
Position (kb) 293
294
295
296 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 292.189 kb on - strand, within GFF4079 at 292.479 kb on + strand, within GFF4079 at 292.658 kb on + strand at 292.659 kb on - strand at 293.068 kb on - strand at 293.113 kb on - strand at 293.214 kb on + strand at 293.466 kb on + strand, within GFF4081 at 293.467 kb on - strand, within GFF4081 at 293.808 kb on - strand, within GFF4081 at 294.297 kb on + strand, within GFF4081 at 294.298 kb on - strand, within GFF4081 at 294.480 kb on + strand, within GFF4081 at 294.487 kb on - strand, within GFF4081 at 294.487 kb on - strand, within GFF4081 at 294.522 kb on + strand, within GFF4081 at 294.627 kb on + strand, within GFF4081 at 294.627 kb on + strand, within GFF4081 at 294.865 kb on - strand at 294.980 kb on + strand at 295.694 kb on - strand at 295.694 kb on - strand at 295.777 kb on + strand, within GFF4083 at 295.777 kb on + strand, within GFF4083 at 295.778 kb on - strand, within GFF4083 at 295.778 kb on - strand, within GFF4083
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 292,189 - GFF4079 0.36 +0.9 292,479 + GFF4079 0.80 -0.6 292,658 + -0.5 292,659 - +0.7 293,068 - -0.5 293,113 - +1.3 293,214 + -1.2 293,466 + GFF4081 0.21 +0.3 293,467 - GFF4081 0.21 +0.4 293,808 - GFF4081 0.38 +1.1 294,297 + GFF4081 0.62 -1.0 294,298 - GFF4081 0.62 +0.6 294,480 + GFF4081 0.71 -1.4 294,487 - GFF4081 0.71 +1.3 294,487 - GFF4081 0.71 +1.4 294,522 + GFF4081 0.73 -2.5 294,627 + GFF4081 0.78 -1.6 294,627 + GFF4081 0.78 -2.6 294,865 - -4.1 294,980 + +0.6 295,694 - +0.4 295,694 - -0.8 295,777 + GFF4083 0.13 +0.3 295,777 + GFF4083 0.13 -1.2 295,778 - GFF4083 0.13 +0.5 295,778 - GFF4083 0.13 -0.6
Or see this region's nucleotide sequence