Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4047 and GFF4048 are separated by 9 nucleotides GFF4048 and GFF4049 are separated by 311 nucleotides GFF4049 and GFF4050 are separated by 48 nucleotides
GFF4047 - Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein CzcB, at 260,201 to 261,796
GFF4047
GFF4048 - Cobalt/zinc/cadmium efflux RND transporter, outer membrane protein CzcC, at 261,806 to 262,894
GFF4048
GFF4049 - no description, at 263,206 to 263,322
GFF4049
GFF4050 - no description, at 263,371 to 263,559
GFF4050
Position (kb) 261
262
263 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 260.931 kb on + strand, within GFF4047 at 260.932 kb on - strand, within GFF4047 at 260.932 kb on - strand, within GFF4047 at 261.021 kb on - strand, within GFF4047 at 261.021 kb on - strand, within GFF4047 at 261.252 kb on + strand, within GFF4047 at 261.395 kb on + strand, within GFF4047 at 261.435 kb on + strand, within GFF4047 at 261.436 kb on - strand, within GFF4047 at 261.906 kb on + strand at 261.923 kb on + strand, within GFF4048 at 261.923 kb on + strand, within GFF4048 at 261.924 kb on - strand, within GFF4048 at 261.924 kb on - strand, within GFF4048 at 261.931 kb on + strand, within GFF4048 at 261.931 kb on + strand, within GFF4048 at 261.932 kb on - strand, within GFF4048 at 261.957 kb on + strand, within GFF4048 at 261.958 kb on - strand, within GFF4048 at 262.065 kb on + strand, within GFF4048 at 262.066 kb on - strand, within GFF4048 at 262.066 kb on - strand, within GFF4048 at 262.086 kb on - strand, within GFF4048 at 262.319 kb on + strand, within GFF4048 at 262.600 kb on + strand, within GFF4048 at 262.699 kb on - strand, within GFF4048 at 262.699 kb on - strand, within GFF4048 at 262.754 kb on - strand, within GFF4048 at 262.754 kb on - strand, within GFF4048 at 262.754 kb on - strand, within GFF4048 at 262.800 kb on - strand at 262.826 kb on + strand at 262.969 kb on + strand at 262.969 kb on + strand at 262.969 kb on + strand at 262.970 kb on - strand at 263.075 kb on - strand at 263.282 kb on - strand, within GFF4049 at 263.341 kb on + strand at 263.342 kb on - strand at 263.498 kb on + strand, within GFF4050 at 263.557 kb on + strand at 263.582 kb on + strand at 263.586 kb on + strand at 263.586 kb on + strand at 263.586 kb on + strand at 263.586 kb on + strand at 263.586 kb on + strand at 263.587 kb on - strand at 263.587 kb on - strand at 263.587 kb on - strand at 263.587 kb on - strand at 263.587 kb on - strand at 263.664 kb on - strand at 263.664 kb on - strand at 263.743 kb on + strand at 263.818 kb on + strand at 263.819 kb on - strand at 263.832 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 260,931 + GFF4047 0.46 -1.5 260,932 - GFF4047 0.46 +0.9 260,932 - GFF4047 0.46 -1.5 261,021 - GFF4047 0.51 +0.9 261,021 - GFF4047 0.51 -1.4 261,252 + GFF4047 0.66 -2.0 261,395 + GFF4047 0.75 -2.6 261,435 + GFF4047 0.77 -1.0 261,436 - GFF4047 0.77 -0.4 261,906 + +0.9 261,923 + GFF4048 0.11 +1.2 261,923 + GFF4048 0.11 -0.2 261,924 - GFF4048 0.11 -1.3 261,924 - GFF4048 0.11 -1.2 261,931 + GFF4048 0.11 -0.0 261,931 + GFF4048 0.11 +5.3 261,932 - GFF4048 0.12 -1.7 261,957 + GFF4048 0.14 -0.2 261,958 - GFF4048 0.14 +0.1 262,065 + GFF4048 0.24 -0.4 262,066 - GFF4048 0.24 -1.3 262,066 - GFF4048 0.24 +0.7 262,086 - GFF4048 0.26 -1.3 262,319 + GFF4048 0.47 +0.2 262,600 + GFF4048 0.73 -0.2 262,699 - GFF4048 0.82 +0.7 262,699 - GFF4048 0.82 +1.1 262,754 - GFF4048 0.87 +2.8 262,754 - GFF4048 0.87 -1.2 262,754 - GFF4048 0.87 -0.9 262,800 - -1.5 262,826 + -2.1 262,969 + -2.6 262,969 + +0.3 262,969 + -0.8 262,970 - -2.2 263,075 - -1.1 263,282 - GFF4049 0.65 -0.8 263,341 + -0.1 263,342 - -1.9 263,498 + GFF4050 0.67 +1.2 263,557 + +0.4 263,582 + +0.4 263,586 + +0.2 263,586 + +0.2 263,586 + +0.4 263,586 + -1.5 263,586 + -0.9 263,587 - +3.4 263,587 - +0.9 263,587 - -1.0 263,587 - -1.4 263,587 - -0.2 263,664 - -0.5 263,664 - -0.4 263,743 + +0.8 263,818 + +0.7 263,819 - -1.0 263,832 + +1.9
Or see this region's nucleotide sequence