Strain Fitness in Variovorax sp. SCN45 around GFF3955

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3954 and GFF3955 are separated by 25 nucleotidesGFF3955 and GFF3956 overlap by 4 nucleotides GFF3954 - Similar to cobalamin biosynthesis protein CbiB, at 154,769 to 155,770 GFF3954 GFF3955 - Histidinol-phosphate aminotransferase (EC 2.6.1.9), at 155,796 to 156,890 GFF3955 GFF3956 - no description, at 156,887 to 157,930 GFF3956 Position (kb) 155 156 157Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 154.841 kb on + strandat 154.842 kb on - strandat 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.027 kb on + strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.028 kb on - strand, within GFF3954at 155.285 kb on + strand, within GFF3954at 155.286 kb on - strand, within GFF3954at 155.286 kb on - strand, within GFF3954at 155.286 kb on - strand, within GFF3954at 155.286 kb on - strand, within GFF3954at 155.850 kb on + strandat 155.850 kb on + strandat 155.851 kb on - strandat 155.851 kb on - strandat 155.851 kb on - strandat 155.851 kb on - strandat 155.851 kb on - strandat 155.976 kb on + strand, within GFF3955at 155.976 kb on + strand, within GFF3955at 155.976 kb on + strand, within GFF3955at 156.138 kb on + strand, within GFF3955at 156.138 kb on + strand, within GFF3955at 156.138 kb on + strand, within GFF3955at 156.138 kb on + strand, within GFF3955at 156.139 kb on - strand, within GFF3955at 156.139 kb on - strand, within GFF3955at 156.139 kb on - strand, within GFF3955at 156.139 kb on - strand, within GFF3955at 156.139 kb on - strand, within GFF3955at 156.147 kb on + strand, within GFF3955at 156.147 kb on + strand, within GFF3955at 156.147 kb on + strand, within GFF3955at 156.147 kb on + strand, within GFF3955at 156.147 kb on + strand, within GFF3955at 156.148 kb on - strand, within GFF3955at 156.148 kb on - strand, within GFF3955at 156.148 kb on - strand, within GFF3955at 156.148 kb on - strand, within GFF3955at 156.148 kb on - strand, within GFF3955at 156.157 kb on - strand, within GFF3955at 156.168 kb on + strand, within GFF3955at 156.168 kb on + strand, within GFF3955at 156.168 kb on + strand, within GFF3955at 156.168 kb on + strand, within GFF3955at 156.169 kb on - strand, within GFF3955at 156.169 kb on - strand, within GFF3955at 156.169 kb on - strand, within GFF3955at 156.369 kb on + strand, within GFF3955at 156.369 kb on + strand, within GFF3955at 156.369 kb on + strand, within GFF3955at 156.370 kb on - strand, within GFF3955at 156.370 kb on - strand, within GFF3955at 156.370 kb on - strand, within GFF3955at 156.370 kb on - strand, within GFF3955at 156.370 kb on - strand, within GFF3955at 156.370 kb on - strand, within GFF3955at 156.414 kb on + strand, within GFF3955at 156.550 kb on + strand, within GFF3955at 156.795 kb on - strandat 156.804 kb on + strandat 156.805 kb on - strandat 156.805 kb on - strandat 157.274 kb on + strand, within GFF3956at 157.275 kb on - strand, within GFF3956at 157.474 kb on - strand, within GFF3956

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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154,841 + -0.7
154,842 - -0.7
155,027 + GFF3954 0.26 -0.4
155,027 + GFF3954 0.26 -0.5
155,027 + GFF3954 0.26 +4.5
155,027 + GFF3954 0.26 +0.0
155,027 + GFF3954 0.26 -0.8
155,027 + GFF3954 0.26 -1.5
155,027 + GFF3954 0.26 -1.7
155,027 + GFF3954 0.26 +0.2
155,027 + GFF3954 0.26 -3.3
155,027 + GFF3954 0.26 -0.2
155,028 - GFF3954 0.26 -2.2
155,028 - GFF3954 0.26 +0.2
155,028 - GFF3954 0.26 -2.6
155,028 - GFF3954 0.26 +0.2
155,028 - GFF3954 0.26 -1.2
155,028 - GFF3954 0.26 +2.2
155,028 - GFF3954 0.26 +2.2
155,028 - GFF3954 0.26 -2.9
155,028 - GFF3954 0.26 -0.9
155,028 - GFF3954 0.26 -1.2
155,028 - GFF3954 0.26 -0.4
155,028 - GFF3954 0.26 -2.0
155,285 + GFF3954 0.51 +0.6
155,286 - GFF3954 0.52 -0.4
155,286 - GFF3954 0.52 -0.4
155,286 - GFF3954 0.52 +0.2
155,286 - GFF3954 0.52 -0.6
155,850 + -0.1
155,850 + -2.0
155,851 - -2.6
155,851 - -0.4
155,851 - +2.8
155,851 - -0.1
155,851 - -0.2
155,976 + GFF3955 0.16 -1.2
155,976 + GFF3955 0.16 -1.0
155,976 + GFF3955 0.16 +1.2
156,138 + GFF3955 0.31 -0.8
156,138 + GFF3955 0.31 -1.2
156,138 + GFF3955 0.31 +0.6
156,138 + GFF3955 0.31 -1.6
156,139 - GFF3955 0.31 +0.7
156,139 - GFF3955 0.31 -2.1
156,139 - GFF3955 0.31 +0.2
156,139 - GFF3955 0.31 +0.2
156,139 - GFF3955 0.31 -0.5
156,147 + GFF3955 0.32 +2.2
156,147 + GFF3955 0.32 -0.2
156,147 + GFF3955 0.32 -0.9
156,147 + GFF3955 0.32 -1.0
156,147 + GFF3955 0.32 -2.0
156,148 - GFF3955 0.32 -1.2
156,148 - GFF3955 0.32 -2.2
156,148 - GFF3955 0.32 +0.8
156,148 - GFF3955 0.32 +0.4
156,148 - GFF3955 0.32 -0.2
156,157 - GFF3955 0.33 +0.4
156,168 + GFF3955 0.34 +0.2
156,168 + GFF3955 0.34 +0.2
156,168 + GFF3955 0.34 -2.0
156,168 + GFF3955 0.34 -2.4
156,169 - GFF3955 0.34 -0.6
156,169 - GFF3955 0.34 +0.9
156,169 - GFF3955 0.34 -1.9
156,369 + GFF3955 0.52 -0.4
156,369 + GFF3955 0.52 -1.4
156,369 + GFF3955 0.52 +2.2
156,370 - GFF3955 0.52 -3.0
156,370 - GFF3955 0.52 +0.6
156,370 - GFF3955 0.52 -2.7
156,370 - GFF3955 0.52 -0.8
156,370 - GFF3955 0.52 -0.6
156,370 - GFF3955 0.52 -2.6
156,414 + GFF3955 0.56 +2.3
156,550 + GFF3955 0.69 -0.2
156,795 - -0.6
156,804 + -1.4
156,805 - +0.4
156,805 - -2.4
157,274 + GFF3956 0.37 -0.2
157,275 - GFF3956 0.37 +2.2
157,474 - GFF3956 0.56 -2.4

Or see this region's nucleotide sequence