Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3842 and GFF3843 are separated by 6 nucleotides GFF3843 and GFF3844 are separated by 108 nucleotides
GFF3842 - Uncharacterized protein EC-HemY in Proteobacteria (unrelated to HemY-type PPO in GramPositives), at 40,304 to 41,587
GFF3842
GFF3843 - Uncharacterized MFS-type transporter, at 41,594 to 43,162
GFF3843
GFF3844 - Transcriptional regulator, LysR family, at 43,271 to 44,137
GFF3844
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 41.388 kb on - strand, within GFF3842 at 41.388 kb on - strand, within GFF3842 at 41.388 kb on - strand, within GFF3842 at 41.388 kb on - strand, within GFF3842 at 41.484 kb on - strand at 41.484 kb on - strand at 41.947 kb on + strand, within GFF3843 at 41.947 kb on + strand, within GFF3843 at 41.947 kb on + strand, within GFF3843 at 41.947 kb on + strand, within GFF3843 at 41.948 kb on - strand, within GFF3843 at 41.948 kb on - strand, within GFF3843 at 41.948 kb on - strand, within GFF3843 at 42.219 kb on - strand, within GFF3843 at 42.219 kb on - strand, within GFF3843 at 42.219 kb on - strand, within GFF3843 at 42.219 kb on - strand, within GFF3843 at 42.237 kb on + strand, within GFF3843 at 42.238 kb on - strand, within GFF3843 at 42.294 kb on + strand, within GFF3843 at 42.294 kb on + strand, within GFF3843 at 42.294 kb on + strand, within GFF3843 at 42.295 kb on - strand, within GFF3843 at 42.295 kb on - strand, within GFF3843 at 42.295 kb on - strand, within GFF3843 at 42.295 kb on - strand, within GFF3843 at 42.295 kb on - strand, within GFF3843 at 42.295 kb on - strand, within GFF3843 at 42.295 kb on - strand, within GFF3843 at 42.306 kb on + strand, within GFF3843 at 42.306 kb on + strand, within GFF3843 at 42.306 kb on + strand, within GFF3843 at 42.306 kb on + strand, within GFF3843 at 42.307 kb on - strand, within GFF3843 at 42.307 kb on - strand, within GFF3843 at 42.307 kb on - strand, within GFF3843 at 42.307 kb on - strand, within GFF3843 at 42.307 kb on - strand, within GFF3843 at 42.394 kb on - strand, within GFF3843 at 42.519 kb on + strand, within GFF3843 at 42.519 kb on + strand, within GFF3843 at 42.519 kb on + strand, within GFF3843 at 42.519 kb on + strand, within GFF3843 at 42.519 kb on + strand, within GFF3843 at 42.519 kb on + strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.946 kb on - strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on - strand, within GFF3843 at 43.000 kb on - strand, within GFF3843 at 43.000 kb on - strand, within GFF3843 at 43.000 kb on - strand, within GFF3843 at 43.000 kb on - strand, within GFF3843 at 43.000 kb on - strand, within GFF3843 at 43.000 kb on - strand, within GFF3843 at 43.000 kb on - strand, within GFF3843 at 43.000 kb on - strand, within GFF3843 at 43.246 kb on + strand at 43.260 kb on + strand at 43.475 kb on + strand, within GFF3844 at 43.820 kb on + strand, within GFF3844 at 44.007 kb on - strand, within GFF3844 at 44.007 kb on - strand, within GFF3844 at 44.007 kb on - strand, within GFF3844 at 44.124 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 41,388 - GFF3842 0.84 -2.0 41,388 - GFF3842 0.84 -2.5 41,388 - GFF3842 0.84 +1.2 41,388 - GFF3842 0.84 -0.8 41,484 - -2.2 41,484 - -1.5 41,947 + GFF3843 0.22 -0.7 41,947 + GFF3843 0.22 +2.3 41,947 + GFF3843 0.22 +2.7 41,947 + GFF3843 0.22 -2.2 41,948 - GFF3843 0.23 -1.3 41,948 - GFF3843 0.23 +0.7 41,948 - GFF3843 0.23 -1.8 42,219 - GFF3843 0.40 -0.6 42,219 - GFF3843 0.40 +3.2 42,219 - GFF3843 0.40 -1.8 42,219 - GFF3843 0.40 -0.1 42,237 + GFF3843 0.41 -0.4 42,238 - GFF3843 0.41 -0.6 42,294 + GFF3843 0.45 +3.0 42,294 + GFF3843 0.45 +0.4 42,294 + GFF3843 0.45 +2.0 42,295 - GFF3843 0.45 -2.0 42,295 - GFF3843 0.45 -0.4 42,295 - GFF3843 0.45 -1.0 42,295 - GFF3843 0.45 -3.9 42,295 - GFF3843 0.45 -0.9 42,295 - GFF3843 0.45 -2.3 42,295 - GFF3843 0.45 -3.4 42,306 + GFF3843 0.45 +0.2 42,306 + GFF3843 0.45 +0.7 42,306 + GFF3843 0.45 +0.0 42,306 + GFF3843 0.45 +1.4 42,307 - GFF3843 0.45 +0.4 42,307 - GFF3843 0.45 -1.6 42,307 - GFF3843 0.45 +0.4 42,307 - GFF3843 0.45 +2.7 42,307 - GFF3843 0.45 -2.6 42,394 - GFF3843 0.51 -3.2 42,519 + GFF3843 0.59 +2.3 42,519 + GFF3843 0.59 -2.6 42,519 + GFF3843 0.59 -0.3 42,519 + GFF3843 0.59 -0.3 42,519 + GFF3843 0.59 -0.1 42,519 + GFF3843 0.59 -3.1 42,520 - GFF3843 0.59 -0.0 42,520 - GFF3843 0.59 -2.5 42,520 - GFF3843 0.59 +0.9 42,520 - GFF3843 0.59 -2.5 42,520 - GFF3843 0.59 +0.6 42,520 - GFF3843 0.59 -0.2 42,520 - GFF3843 0.59 +0.4 42,520 - GFF3843 0.59 -1.8 42,520 - GFF3843 0.59 +0.8 42,946 - GFF3843 0.86 +2.5 42,999 + GFF3843 0.90 +2.5 42,999 + GFF3843 0.90 -1.0 42,999 + GFF3843 0.90 -2.2 42,999 + GFF3843 0.90 +0.8 42,999 + GFF3843 0.90 +0.7 42,999 + GFF3843 0.90 -0.1 42,999 + GFF3843 0.90 -0.7 42,999 + GFF3843 0.90 -0.3 42,999 + GFF3843 0.90 -3.0 42,999 - GFF3843 0.90 -1.5 43,000 - GFF3843 0.90 -1.9 43,000 - GFF3843 0.90 -1.0 43,000 - GFF3843 0.90 +0.4 43,000 - GFF3843 0.90 -1.9 43,000 - GFF3843 0.90 +0.9 43,000 - GFF3843 0.90 +0.6 43,000 - GFF3843 0.90 -2.2 43,000 - GFF3843 0.90 -2.8 43,246 + -3.2 43,260 + -0.8 43,475 + GFF3844 0.24 +0.9 43,820 + GFF3844 0.63 -0.4 44,007 - GFF3844 0.85 -0.0 44,007 - GFF3844 0.85 +0.6 44,007 - GFF3844 0.85 +0.4 44,124 - -3.5
Or see this region's nucleotide sequence