Strain Fitness in Variovorax sp. SCN45 around GFF3835

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
24,716	+		GFF3833	0.90	-1.6
24,947	+				-2.0
24,947	+				-3.4
24,948	-				-0.4
24,948	-				+1.8
25,012	+				+0.2
25,013	-				-1.2
25,018	+				+2.4
25,018	+				+1.0
25,018	+				-0.3
25,019	-				-0.6
25,019	-				-1.8
25,019	-				+0.2
25,019	-				+0.2
25,380	-		GFF3834	0.68	+0.6
25,468	+		GFF3834	0.84	+0.3
25,688	+		GFF3835	0.34	+0.8
25,688	+		GFF3835	0.34	-2.4
25,689	-		GFF3835	0.34	-0.4
25,689	-		GFF3835	0.34	-0.4
25,689	-		GFF3835	0.34	-2.1
26,001	-				+0.6
26,281	+				-1.2
26,281	+				-1.4
26,308	+				-0.7
26,308	+				+0.4
26,308	-				+1.2
26,309	-				-1.9
26,309	-				+0.6
26,309	-				-0.8
26,323	+				+0.8
26,323	+				-1.2
26,323	+				+0.4
26,324	-				-0.8
26,324	-				+0.9
26,345	-				-0.2
26,485	+				-1.0
26,486	-				-0.4
26,486	-				+0.8
26,530	+				-0.5
26,531	-				+0.2