Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3828 and GFF3829 are separated by 100 nucleotides GFF3829 and GFF3830 overlap by 7 nucleotides
GFF3828 - hypothetical protein, at 17,958 to 20,318
GFF3828
GFF3829 - hypothetical protein, at 20,419 to 20,814
GFF3829
GFF3830 - Uncharacterized MFS-type transporter, at 20,808 to 22,064
GFF3830
Position (kb) 20
21 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 19.523 kb on - strand, within GFF3828 at 19.523 kb on - strand, within GFF3828 at 19.559 kb on - strand, within GFF3828 at 19.723 kb on - strand, within GFF3828 at 19.734 kb on + strand, within GFF3828 at 19.735 kb on - strand, within GFF3828 at 19.735 kb on - strand, within GFF3828 at 20.012 kb on - strand, within GFF3828 at 20.012 kb on - strand, within GFF3828 at 20.079 kb on + strand, within GFF3828 at 20.079 kb on + strand, within GFF3828 at 20.079 kb on + strand, within GFF3828 at 20.080 kb on - strand, within GFF3828 at 20.135 kb on + strand at 20.135 kb on + strand at 20.136 kb on - strand at 20.136 kb on - strand at 20.136 kb on - strand at 20.136 kb on - strand at 20.397 kb on + strand at 20.397 kb on + strand at 20.397 kb on + strand at 20.397 kb on + strand at 20.398 kb on - strand at 20.426 kb on - strand at 20.500 kb on + strand, within GFF3829 at 20.500 kb on + strand, within GFF3829 at 20.500 kb on + strand, within GFF3829 at 20.501 kb on - strand, within GFF3829 at 20.755 kb on + strand, within GFF3829 at 20.755 kb on + strand, within GFF3829 at 20.755 kb on + strand, within GFF3829 at 20.755 kb on + strand, within GFF3829 at 20.755 kb on + strand, within GFF3829 at 20.755 kb on + strand, within GFF3829 at 20.756 kb on - strand, within GFF3829 at 20.756 kb on - strand, within GFF3829 at 20.756 kb on - strand, within GFF3829 at 20.776 kb on + strand at 20.777 kb on - strand at 20.777 kb on - strand at 21.070 kb on + strand, within GFF3830 at 21.103 kb on + strand, within GFF3830 at 21.103 kb on + strand, within GFF3830 at 21.103 kb on + strand, within GFF3830 at 21.104 kb on - strand, within GFF3830 at 21.392 kb on - strand, within GFF3830 at 21.392 kb on - strand, within GFF3830 at 21.392 kb on - strand, within GFF3830 at 21.619 kb on + strand, within GFF3830 at 21.619 kb on + strand, within GFF3830 at 21.619 kb on + strand, within GFF3830 at 21.620 kb on - strand, within GFF3830 at 21.713 kb on - strand, within GFF3830 at 21.745 kb on + strand, within GFF3830 at 21.745 kb on + strand, within GFF3830 at 21.746 kb on - strand, within GFF3830
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 19,523 - GFF3828 0.66 +2.7 19,523 - GFF3828 0.66 +0.1 19,559 - GFF3828 0.68 +0.2 19,723 - GFF3828 0.75 +0.7 19,734 + GFF3828 0.75 -0.8 19,735 - GFF3828 0.75 +2.2 19,735 - GFF3828 0.75 +1.2 20,012 - GFF3828 0.87 +1.8 20,012 - GFF3828 0.87 +2.2 20,079 + GFF3828 0.90 +0.6 20,079 + GFF3828 0.90 -0.4 20,079 + GFF3828 0.90 +0.5 20,080 - GFF3828 0.90 -0.4 20,135 + -1.0 20,135 + -3.8 20,136 - +2.2 20,136 - -2.7 20,136 - +3.3 20,136 - -0.6 20,397 + +0.2 20,397 + +0.6 20,397 + -0.2 20,397 + -0.4 20,398 - +0.0 20,426 - -2.6 20,500 + GFF3829 0.20 -1.0 20,500 + GFF3829 0.20 -1.9 20,500 + GFF3829 0.20 +0.2 20,501 - GFF3829 0.21 -1.2 20,755 + GFF3829 0.85 -2.0 20,755 + GFF3829 0.85 -1.9 20,755 + GFF3829 0.85 -0.7 20,755 + GFF3829 0.85 -0.6 20,755 + GFF3829 0.85 -3.1 20,755 + GFF3829 0.85 +1.2 20,756 - GFF3829 0.85 +1.2 20,756 - GFF3829 0.85 +0.6 20,756 - GFF3829 0.85 -0.6 20,776 + -0.0 20,777 - +1.4 20,777 - +1.0 21,070 + GFF3830 0.21 +0.8 21,103 + GFF3830 0.23 +0.3 21,103 + GFF3830 0.23 -0.6 21,103 + GFF3830 0.23 +1.2 21,104 - GFF3830 0.24 -2.5 21,392 - GFF3830 0.46 +0.7 21,392 - GFF3830 0.46 +1.0 21,392 - GFF3830 0.46 +1.4 21,619 + GFF3830 0.65 +2.2 21,619 + GFF3830 0.65 +0.7 21,619 + GFF3830 0.65 -1.9 21,620 - GFF3830 0.65 +1.0 21,713 - GFF3830 0.72 -2.1 21,745 + GFF3830 0.75 +1.5 21,745 + GFF3830 0.75 -2.6 21,746 - GFF3830 0.75 +4.0
Or see this region's nucleotide sequence