Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3751 and GFF3752 are separated by 65 nucleotides GFF3752 and GFF3753 overlap by 4 nucleotides GFF3753 and GFF3754 are separated by 71 nucleotides
GFF3751 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 245,442 to 246,209
GFF3751
GFF3752 - KEGG: catechol 2,3-dioxygenase , at 246,275 to 246,826
GFF3752
GFF3753 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 246,823 to 247,842
GFF3753
GFF3754 - Fumarylacetoacetate hydrolase family protein, at 247,914 to 248,852
GFF3754
Position (kb) 246
247
248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 245.914 kb on + strand, within GFF3751 at 246.091 kb on + strand, within GFF3751 at 246.091 kb on + strand, within GFF3751 at 246.091 kb on + strand, within GFF3751 at 246.091 kb on + strand, within GFF3751 at 246.092 kb on - strand, within GFF3751 at 246.092 kb on - strand, within GFF3751 at 246.092 kb on - strand, within GFF3751 at 246.132 kb on + strand, within GFF3751 at 246.133 kb on - strand at 246.133 kb on - strand at 246.372 kb on + strand, within GFF3752 at 246.372 kb on + strand, within GFF3752 at 246.372 kb on + strand, within GFF3752 at 246.409 kb on - strand, within GFF3752 at 246.409 kb on - strand, within GFF3752 at 246.409 kb on - strand, within GFF3752 at 246.409 kb on - strand, within GFF3752 at 246.420 kb on + strand, within GFF3752 at 246.420 kb on + strand, within GFF3752 at 246.421 kb on - strand, within GFF3752 at 246.421 kb on - strand, within GFF3752 at 246.421 kb on - strand, within GFF3752 at 246.421 kb on - strand, within GFF3752 at 246.421 kb on - strand, within GFF3752 at 246.421 kb on - strand, within GFF3752 at 246.421 kb on - strand, within GFF3752 at 246.421 kb on - strand, within GFF3752 at 246.516 kb on + strand, within GFF3752 at 246.558 kb on + strand, within GFF3752 at 246.558 kb on + strand, within GFF3752 at 246.594 kb on + strand, within GFF3752 at 246.594 kb on + strand, within GFF3752 at 246.594 kb on + strand, within GFF3752 at 246.595 kb on - strand, within GFF3752 at 246.595 kb on - strand, within GFF3752 at 246.595 kb on - strand, within GFF3752 at 246.595 kb on - strand, within GFF3752 at 246.726 kb on + strand, within GFF3752 at 246.726 kb on + strand, within GFF3752 at 246.727 kb on - strand, within GFF3752 at 246.848 kb on + strand at 246.848 kb on + strand at 246.848 kb on + strand at 246.848 kb on + strand at 246.848 kb on + strand at 246.848 kb on + strand at 246.848 kb on + strand at 246.848 kb on + strand at 246.848 kb on + strand at 246.848 kb on + strand at 246.848 kb on + strand at 246.848 kb on + strand at 246.848 kb on + strand at 246.848 kb on + strand at 246.848 kb on + strand at 246.848 kb on + strand at 246.849 kb on - strand at 246.849 kb on - strand at 246.849 kb on - strand at 246.849 kb on - strand at 246.849 kb on - strand at 246.849 kb on - strand at 246.849 kb on - strand at 246.849 kb on - strand at 246.849 kb on - strand at 246.849 kb on - strand at 246.935 kb on + strand, within GFF3753 at 246.935 kb on + strand, within GFF3753 at 246.935 kb on + strand, within GFF3753 at 246.935 kb on + strand, within GFF3753 at 246.936 kb on - strand, within GFF3753 at 247.076 kb on + strand, within GFF3753 at 247.077 kb on - strand, within GFF3753 at 247.083 kb on - strand, within GFF3753 at 247.169 kb on + strand, within GFF3753 at 247.193 kb on + strand, within GFF3753 at 247.193 kb on + strand, within GFF3753 at 247.193 kb on + strand, within GFF3753 at 247.193 kb on + strand, within GFF3753 at 247.193 kb on + strand, within GFF3753 at 247.568 kb on + strand, within GFF3753 at 247.568 kb on + strand, within GFF3753 at 247.569 kb on - strand, within GFF3753 at 247.727 kb on + strand, within GFF3753 at 247.727 kb on + strand, within GFF3753 at 247.727 kb on + strand, within GFF3753 at 247.727 kb on + strand, within GFF3753 at 247.727 kb on + strand, within GFF3753 at 247.727 kb on + strand, within GFF3753 at 247.727 kb on + strand, within GFF3753 at 247.727 kb on + strand, within GFF3753 at 247.727 kb on + strand, within GFF3753 at 247.727 kb on + strand, within GFF3753 at 247.727 kb on + strand, within GFF3753 at 247.727 kb on + strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.728 kb on - strand, within GFF3753 at 247.853 kb on + strand at 247.853 kb on + strand at 247.853 kb on + strand at 247.853 kb on + strand at 247.853 kb on + strand at 247.853 kb on + strand at 247.853 kb on + strand at 247.853 kb on + strand at 247.853 kb on + strand at 247.853 kb on + strand at 247.853 kb on + strand at 247.853 kb on + strand at 247.853 kb on + strand at 247.854 kb on - strand at 247.854 kb on - strand at 247.854 kb on - strand at 247.854 kb on - strand at 247.854 kb on - strand at 247.854 kb on - strand at 247.854 kb on - strand at 247.854 kb on - strand at 247.996 kb on + strand at 247.996 kb on + strand at 247.997 kb on - strand at 247.997 kb on - strand at 248.080 kb on + strand, within GFF3754 at 248.080 kb on + strand, within GFF3754 at 248.081 kb on - strand, within GFF3754 at 248.081 kb on - strand, within GFF3754 at 248.081 kb on - strand, within GFF3754 at 248.081 kb on - strand, within GFF3754 at 248.270 kb on - strand, within GFF3754 at 248.320 kb on + strand, within GFF3754 at 248.320 kb on + strand, within GFF3754 at 248.320 kb on + strand, within GFF3754 at 248.320 kb on + strand, within GFF3754 at 248.320 kb on + strand, within GFF3754 at 248.320 kb on + strand, within GFF3754 at 248.320 kb on + strand, within GFF3754 at 248.320 kb on + strand, within GFF3754 at 248.320 kb on + strand, within GFF3754 at 248.321 kb on - strand, within GFF3754 at 248.321 kb on - strand, within GFF3754 at 248.321 kb on - strand, within GFF3754 at 248.321 kb on - strand, within GFF3754 at 248.321 kb on - strand, within GFF3754 at 248.321 kb on - strand, within GFF3754 at 248.321 kb on - strand, within GFF3754 at 248.321 kb on - strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.482 kb on + strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.483 kb on - strand, within GFF3754 at 248.542 kb on + strand, within GFF3754 at 248.542 kb on + strand, within GFF3754 at 248.542 kb on + strand, within GFF3754 at 248.542 kb on + strand, within GFF3754 at 248.542 kb on + strand, within GFF3754 at 248.542 kb on + strand, within GFF3754 at 248.542 kb on + strand, within GFF3754 at 248.542 kb on + strand, within GFF3754 at 248.542 kb on + strand, within GFF3754 at 248.543 kb on - strand, within GFF3754 at 248.543 kb on - strand, within GFF3754 at 248.543 kb on - strand, within GFF3754 at 248.543 kb on - strand, within GFF3754 at 248.543 kb on - strand, within GFF3754 at 248.543 kb on - strand, within GFF3754 at 248.543 kb on - strand, within GFF3754 at 248.543 kb on - strand, within GFF3754 at 248.543 kb on - strand, within GFF3754 at 248.578 kb on + strand, within GFF3754 at 248.578 kb on + strand, within GFF3754 at 248.579 kb on - strand, within GFF3754 at 248.579 kb on - strand, within GFF3754 at 248.579 kb on - strand, within GFF3754 at 248.579 kb on - strand, within GFF3754 at 248.579 kb on - strand, within GFF3754 at 248.776 kb on + strand at 248.776 kb on + strand at 248.776 kb on + strand at 248.776 kb on + strand at 248.777 kb on - strand at 248.777 kb on - strand at 248.777 kb on - strand at 248.777 kb on - strand at 248.827 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 245,914 + GFF3751 0.61 -1.6 246,091 + GFF3751 0.85 +0.7 246,091 + GFF3751 0.85 -1.2 246,091 + GFF3751 0.85 -1.5 246,091 + GFF3751 0.85 +0.2 246,092 - GFF3751 0.85 -3.2 246,092 - GFF3751 0.85 +0.5 246,092 - GFF3751 0.85 -1.2 246,132 + GFF3751 0.90 -0.6 246,133 - +0.2 246,133 - +0.4 246,372 + GFF3752 0.18 -1.3 246,372 + GFF3752 0.18 -2.0 246,372 + GFF3752 0.18 -0.2 246,409 - GFF3752 0.24 +0.2 246,409 - GFF3752 0.24 -0.9 246,409 - GFF3752 0.24 -0.3 246,409 - GFF3752 0.24 +2.2 246,420 + GFF3752 0.26 +1.6 246,420 + GFF3752 0.26 +0.2 246,421 - GFF3752 0.26 +0.7 246,421 - GFF3752 0.26 -0.1 246,421 - GFF3752 0.26 -1.7 246,421 - GFF3752 0.26 +1.0 246,421 - GFF3752 0.26 -0.5 246,421 - GFF3752 0.26 +1.3 246,421 - GFF3752 0.26 +1.0 246,421 - GFF3752 0.26 -1.9 246,516 + GFF3752 0.44 -1.0 246,558 + GFF3752 0.51 +0.4 246,558 + GFF3752 0.51 +0.2 246,594 + GFF3752 0.58 -1.6 246,594 + GFF3752 0.58 -1.6 246,594 + GFF3752 0.58 -0.6 246,595 - GFF3752 0.58 -2.7 246,595 - GFF3752 0.58 -1.3 246,595 - GFF3752 0.58 +1.5 246,595 - GFF3752 0.58 +1.2 246,726 + GFF3752 0.82 -1.2 246,726 + GFF3752 0.82 -1.4 246,727 - GFF3752 0.82 -0.3 246,848 + -0.3 246,848 + -0.7 246,848 + +0.6 246,848 + -0.9 246,848 + -1.3 246,848 + -0.6 246,848 + -0.5 246,848 + -0.8 246,848 + +0.1 246,848 + -1.2 246,848 + -0.2 246,848 + -2.8 246,848 + -1.4 246,848 + +0.4 246,848 + -0.5 246,848 + -1.6 246,849 - -1.7 246,849 - -0.2 246,849 - -0.6 246,849 - -0.2 246,849 - -0.5 246,849 - -2.3 246,849 - +3.5 246,849 - -0.9 246,849 - -2.5 246,849 - -0.2 246,935 + GFF3753 0.11 +1.1 246,935 + GFF3753 0.11 -2.7 246,935 + GFF3753 0.11 +0.1 246,935 + GFF3753 0.11 -0.1 246,936 - GFF3753 0.11 -1.0 247,076 + GFF3753 0.25 +2.5 247,077 - GFF3753 0.25 +0.3 247,083 - GFF3753 0.25 -2.1 247,169 + GFF3753 0.34 +0.8 247,193 + GFF3753 0.36 +0.1 247,193 + GFF3753 0.36 +1.8 247,193 + GFF3753 0.36 +1.1 247,193 + GFF3753 0.36 -0.8 247,193 + GFF3753 0.36 +0.0 247,568 + GFF3753 0.73 -1.6 247,568 + GFF3753 0.73 +0.0 247,569 - GFF3753 0.73 -0.8 247,727 + GFF3753 0.89 -2.5 247,727 + GFF3753 0.89 -0.8 247,727 + GFF3753 0.89 +0.8 247,727 + GFF3753 0.89 +0.6 247,727 + GFF3753 0.89 -0.3 247,727 + GFF3753 0.89 +0.5 247,727 + GFF3753 0.89 +0.6 247,727 + GFF3753 0.89 -0.3 247,727 + GFF3753 0.89 -0.5 247,727 + GFF3753 0.89 +1.9 247,727 + GFF3753 0.89 +0.6 247,727 + GFF3753 0.89 +0.7 247,728 - GFF3753 0.89 -0.9 247,728 - GFF3753 0.89 -0.9 247,728 - GFF3753 0.89 -0.3 247,728 - GFF3753 0.89 -1.5 247,728 - GFF3753 0.89 -1.3 247,728 - GFF3753 0.89 +2.5 247,728 - GFF3753 0.89 +0.2 247,728 - GFF3753 0.89 +0.4 247,728 - GFF3753 0.89 -2.7 247,728 - GFF3753 0.89 -0.1 247,728 - GFF3753 0.89 +0.0 247,728 - GFF3753 0.89 +1.0 247,728 - GFF3753 0.89 +2.5 247,728 - GFF3753 0.89 +1.3 247,728 - GFF3753 0.89 -0.8 247,728 - GFF3753 0.89 -3.1 247,728 - GFF3753 0.89 -0.3 247,728 - GFF3753 0.89 +1.0 247,853 + -1.8 247,853 + -2.9 247,853 + +0.5 247,853 + -1.2 247,853 + -1.8 247,853 + -1.0 247,853 + -0.0 247,853 + -1.0 247,853 + +0.7 247,853 + +1.3 247,853 + +2.0 247,853 + -1.1 247,853 + +1.6 247,854 - -0.3 247,854 - -1.2 247,854 - -0.0 247,854 - -0.0 247,854 - -2.5 247,854 - -0.2 247,854 - -1.0 247,854 - +1.7 247,996 + -2.0 247,996 + +1.5 247,997 - +2.0 247,997 - +0.6 248,080 + GFF3754 0.18 -0.0 248,080 + GFF3754 0.18 -0.7 248,081 - GFF3754 0.18 +0.2 248,081 - GFF3754 0.18 -1.6 248,081 - GFF3754 0.18 +0.4 248,081 - GFF3754 0.18 -0.8 248,270 - GFF3754 0.38 -2.3 248,320 + GFF3754 0.43 +0.5 248,320 + GFF3754 0.43 -2.1 248,320 + GFF3754 0.43 -0.6 248,320 + GFF3754 0.43 -1.2 248,320 + GFF3754 0.43 +1.2 248,320 + GFF3754 0.43 -1.0 248,320 + GFF3754 0.43 +0.1 248,320 + GFF3754 0.43 -1.3 248,320 + GFF3754 0.43 -3.6 248,321 - GFF3754 0.43 +1.3 248,321 - GFF3754 0.43 +4.0 248,321 - GFF3754 0.43 +0.0 248,321 - GFF3754 0.43 -1.6 248,321 - GFF3754 0.43 +0.7 248,321 - GFF3754 0.43 -0.1 248,321 - GFF3754 0.43 +0.5 248,321 - GFF3754 0.43 -0.6 248,482 + GFF3754 0.60 -1.0 248,482 + GFF3754 0.60 +2.0 248,482 + GFF3754 0.60 +1.5 248,482 + GFF3754 0.60 +3.2 248,482 + GFF3754 0.60 -2.3 248,482 + GFF3754 0.60 -1.1 248,482 + GFF3754 0.60 -0.5 248,482 + GFF3754 0.60 +1.1 248,482 + GFF3754 0.60 +0.4 248,482 + GFF3754 0.60 +2.1 248,482 + GFF3754 0.60 +0.2 248,482 + GFF3754 0.60 -0.9 248,482 + GFF3754 0.60 -0.0 248,482 + GFF3754 0.60 +0.8 248,482 + GFF3754 0.60 -0.9 248,482 + GFF3754 0.60 -0.5 248,482 + GFF3754 0.60 -0.5 248,482 + GFF3754 0.60 -0.9 248,482 + GFF3754 0.60 +2.0 248,482 + GFF3754 0.60 -1.7 248,482 + GFF3754 0.60 +1.4 248,482 + GFF3754 0.60 -0.5 248,482 + GFF3754 0.60 -0.9 248,482 + GFF3754 0.60 -1.1 248,482 + GFF3754 0.60 -1.1 248,482 + GFF3754 0.60 +0.2 248,482 + GFF3754 0.60 -1.8 248,482 + GFF3754 0.60 +0.9 248,483 - GFF3754 0.61 -1.2 248,483 - GFF3754 0.61 -0.1 248,483 - GFF3754 0.61 -1.8 248,483 - GFF3754 0.61 -0.8 248,483 - GFF3754 0.61 -2.1 248,483 - GFF3754 0.61 +2.5 248,483 - GFF3754 0.61 +0.5 248,483 - GFF3754 0.61 -0.9 248,483 - GFF3754 0.61 +2.0 248,483 - GFF3754 0.61 +1.7 248,483 - GFF3754 0.61 -0.0 248,483 - GFF3754 0.61 +2.1 248,483 - GFF3754 0.61 +0.1 248,483 - GFF3754 0.61 -1.7 248,483 - GFF3754 0.61 -2.6 248,483 - GFF3754 0.61 +1.3 248,483 - GFF3754 0.61 +0.0 248,483 - GFF3754 0.61 -0.5 248,483 - GFF3754 0.61 +2.3 248,483 - GFF3754 0.61 +0.2 248,483 - GFF3754 0.61 +0.1 248,542 + GFF3754 0.67 -2.8 248,542 + GFF3754 0.67 -2.4 248,542 + GFF3754 0.67 +0.4 248,542 + GFF3754 0.67 -0.4 248,542 + GFF3754 0.67 +1.1 248,542 + GFF3754 0.67 -1.3 248,542 + GFF3754 0.67 +0.6 248,542 + GFF3754 0.67 -0.5 248,542 + GFF3754 0.67 +0.9 248,543 - GFF3754 0.67 -0.6 248,543 - GFF3754 0.67 -0.6 248,543 - GFF3754 0.67 +2.2 248,543 - GFF3754 0.67 -2.0 248,543 - GFF3754 0.67 +0.5 248,543 - GFF3754 0.67 -1.1 248,543 - GFF3754 0.67 -1.9 248,543 - GFF3754 0.67 +0.1 248,543 - GFF3754 0.67 -0.1 248,578 + GFF3754 0.71 -1.0 248,578 + GFF3754 0.71 +1.3 248,579 - GFF3754 0.71 +0.5 248,579 - GFF3754 0.71 -0.4 248,579 - GFF3754 0.71 -0.6 248,579 - GFF3754 0.71 -1.5 248,579 - GFF3754 0.71 -1.5 248,776 + -1.0 248,776 + +2.8 248,776 + -0.9 248,776 + -0.8 248,777 - -0.9 248,777 - +0.3 248,777 - +1.0 248,777 - -0.1 248,827 + -1.3
Or see this region's nucleotide sequence