Strain Fitness in Variovorax sp. SCN45 around GFF3686

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3685 and GFF3686 are separated by 95 nucleotidesGFF3686 and GFF3687 are separated by 122 nucleotides GFF3685 - ATP synthase gamma chain (EC 3.6.3.14), at 184,415 to 185,290 GFF3685 GFF3686 - Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168), at 185,386 to 185,784 GFF3686 GFF3687 - ATP synthase beta chain (EC 3.6.3.14), at 185,907 to 187,307 GFF3687 Position (kb) 185 186Strain fitness (log2 ratio) -2 -1 0 1 2at 185.369 kb on + strandat 185.377 kb on + strandat 185.377 kb on + strandat 185.377 kb on + strandat 185.377 kb on + strandat 185.377 kb on + strandat 185.377 kb on + strandat 185.599 kb on + strand, within GFF3686at 185.599 kb on + strand, within GFF3686at 185.599 kb on + strand, within GFF3686at 185.685 kb on + strand, within GFF3686at 185.685 kb on + strand, within GFF3686

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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185,369 + +1.8
185,377 + -0.8
185,377 + +0.5
185,377 + -1.9
185,377 + -0.0
185,377 + -0.5
185,377 + -1.9
185,599 + GFF3686 0.53 +2.0
185,599 + GFF3686 0.53 +1.0
185,599 + GFF3686 0.53 -0.9
185,685 + GFF3686 0.75 +1.7
185,685 + GFF3686 0.75 -1.0

Or see this region's nucleotide sequence