Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF365 and GFF366 are separated by 80 nucleotides GFF366 and GFF367 overlap by 4 nucleotides
GFF365 - Acyl-CoA dehydrogenase, at 395,712 to 396,983
GFF365
GFF366 - Histone acetyltransferase HPA2 and related acetyltransferases, at 397,064 to 397,558
GFF366
GFF367 - Phosphoglucosamine mutase (EC 5.4.2.10), at 397,555 to 398,892
GFF367
Position (kb) 397
398 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.217 kb on - strand, within GFF365 at 396.217 kb on - strand, within GFF365 at 396.217 kb on - strand, within GFF365 at 396.217 kb on - strand, within GFF365 at 396.217 kb on - strand, within GFF365 at 396.393 kb on + strand, within GFF365 at 396.394 kb on - strand, within GFF365 at 396.394 kb on - strand, within GFF365 at 396.426 kb on + strand, within GFF365 at 396.426 kb on + strand, within GFF365 at 396.426 kb on + strand, within GFF365 at 396.426 kb on + strand, within GFF365 at 396.426 kb on + strand, within GFF365 at 396.427 kb on - strand, within GFF365 at 396.427 kb on - strand, within GFF365 at 396.427 kb on - strand, within GFF365 at 396.427 kb on - strand, within GFF365 at 396.427 kb on - strand, within GFF365 at 396.846 kb on + strand, within GFF365 at 396.846 kb on + strand, within GFF365 at 396.846 kb on + strand, within GFF365 at 396.847 kb on - strand, within GFF365 at 396.847 kb on - strand, within GFF365 at 396.936 kb on + strand at 396.936 kb on + strand at 396.936 kb on + strand at 396.936 kb on + strand at 396.936 kb on + strand at 396.937 kb on - strand at 396.937 kb on - strand at 396.937 kb on - strand at 396.937 kb on - strand at 396.937 kb on - strand at 397.117 kb on - strand, within GFF366 at 397.117 kb on - strand, within GFF366 at 397.140 kb on + strand, within GFF366 at 397.140 kb on + strand, within GFF366 at 397.140 kb on + strand, within GFF366 at 397.140 kb on + strand, within GFF366 at 397.140 kb on + strand, within GFF366 at 397.140 kb on + strand, within GFF366 at 397.140 kb on + strand, within GFF366 at 397.141 kb on - strand, within GFF366 at 397.141 kb on - strand, within GFF366 at 397.141 kb on - strand, within GFF366 at 397.141 kb on - strand, within GFF366 at 397.141 kb on - strand, within GFF366 at 397.141 kb on - strand, within GFF366 at 397.144 kb on + strand, within GFF366 at 397.144 kb on + strand, within GFF366 at 397.144 kb on + strand, within GFF366 at 397.144 kb on + strand, within GFF366 at 397.144 kb on + strand, within GFF366 at 397.145 kb on - strand, within GFF366 at 397.470 kb on + strand, within GFF366 at 397.470 kb on + strand, within GFF366 at 397.470 kb on + strand, within GFF366 at 397.470 kb on + strand, within GFF366 at 397.470 kb on + strand, within GFF366 at 397.471 kb on - strand, within GFF366 at 397.519 kb on - strand at 397.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 396,216 + GFF365 0.40 -0.3 396,216 + GFF365 0.40 -0.2 396,216 + GFF365 0.40 +1.4 396,216 + GFF365 0.40 -1.1 396,216 + GFF365 0.40 -0.4 396,216 + GFF365 0.40 -0.7 396,216 + GFF365 0.40 -3.9 396,216 + GFF365 0.40 +0.9 396,217 - GFF365 0.40 -0.4 396,217 - GFF365 0.40 -0.0 396,217 - GFF365 0.40 -1.6 396,217 - GFF365 0.40 -1.8 396,217 - GFF365 0.40 -0.6 396,393 + GFF365 0.54 -1.6 396,394 - GFF365 0.54 -1.5 396,394 - GFF365 0.54 -0.6 396,426 + GFF365 0.56 -1.7 396,426 + GFF365 0.56 -2.8 396,426 + GFF365 0.56 -1.6 396,426 + GFF365 0.56 -2.7 396,426 + GFF365 0.56 +0.9 396,427 - GFF365 0.56 -1.4 396,427 - GFF365 0.56 +0.5 396,427 - GFF365 0.56 -3.5 396,427 - GFF365 0.56 -0.8 396,427 - GFF365 0.56 -0.6 396,846 + GFF365 0.89 -1.5 396,846 + GFF365 0.89 -2.9 396,846 + GFF365 0.89 -2.1 396,847 - GFF365 0.89 -3.3 396,847 - GFF365 0.89 -0.1 396,936 + -0.3 396,936 + -0.1 396,936 + +1.9 396,936 + -1.9 396,936 + -1.3 396,937 - -1.3 396,937 - +0.9 396,937 - -0.9 396,937 - -3.5 396,937 - -1.4 397,117 - GFF366 0.11 -0.9 397,117 - GFF366 0.11 -0.9 397,140 + GFF366 0.15 -0.9 397,140 + GFF366 0.15 -0.7 397,140 + GFF366 0.15 -3.7 397,140 + GFF366 0.15 -1.7 397,140 + GFF366 0.15 -1.0 397,140 + GFF366 0.15 +0.3 397,140 + GFF366 0.15 -2.3 397,141 - GFF366 0.16 -0.3 397,141 - GFF366 0.16 +0.6 397,141 - GFF366 0.16 -1.8 397,141 - GFF366 0.16 +1.4 397,141 - GFF366 0.16 -0.4 397,141 - GFF366 0.16 -0.1 397,144 + GFF366 0.16 +0.0 397,144 + GFF366 0.16 -2.0 397,144 + GFF366 0.16 -0.6 397,144 + GFF366 0.16 -2.0 397,144 + GFF366 0.16 -0.3 397,145 - GFF366 0.16 -1.3 397,470 + GFF366 0.82 +1.1 397,470 + GFF366 0.82 +0.5 397,470 + GFF366 0.82 -1.3 397,470 + GFF366 0.82 -0.1 397,470 + GFF366 0.82 -1.6 397,471 - GFF366 0.82 -0.8 397,519 - +1.1 397,519 - +1.6
Or see this region's nucleotide sequence