Strain Fitness in Variovorax sp. SCN45 around GFF3647

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
152,087	+		GFF3645	0.37	-2.0
152,087	+		GFF3645	0.37	+0.0
152,087	+		GFF3645	0.37	-1.0
152,087	+		GFF3645	0.37	-2.6
152,087	+		GFF3645	0.37	+0.1
152,087	+		GFF3645	0.37	-1.5
152,087	+		GFF3645	0.37	-0.8
152,087	+		GFF3645	0.37	-1.9
152,088	-		GFF3645	0.37	-1.5
152,088	-		GFF3645	0.37	-0.7
152,088	-		GFF3645	0.37	-1.7
152,088	-		GFF3645	0.37	+0.4
152,300	+		GFF3645	0.79	+0.3
152,300	+		GFF3645	0.79	+0.6
152,301	-		GFF3645	0.79	-3.9
152,432	+				+0.9
152,432	+				-1.0
152,432	+				+1.1
152,433	-				-0.9
152,433	-				+0.2
152,433	-				-1.8
152,433	-				-0.5
152,433	-				+0.1
152,433	-				-1.3
152,433	-				-0.5
152,433	-				+1.0
152,433	-				-1.0
152,459	+				-1.4
152,459	+				-1.9
152,459	+				+0.8
152,459	+				-0.0
152,459	+				+1.8
152,459	+				-1.0
152,459	+				-1.2
152,459	+				+0.4
152,459	+				-1.7
152,459	+				-0.8
152,459	+				-2.2
152,459	+				-2.4
152,459	+				-0.1
152,459	+				-0.5
152,460	-				-1.6
152,460	-				-0.0
152,460	-				+0.5
152,460	-				-0.0
152,460	-				+1.1
152,460	-				-2.0
152,460	-				-0.3
152,460	-				-0.9
152,460	-				+0.2
152,460	-				-0.0
152,460	-				+0.2
152,460	-				-1.9
152,460	-				-0.3
152,460	-				-2.0
152,460	-				-1.3
152,460	-				+1.0
152,460	-				+1.3
152,462	+				-1.6
152,462	+				-2.7
152,462	+				-0.0
152,462	+				-0.4
152,462	+				+1.0
152,462	+				-0.1
152,462	+				-1.4
152,462	+				-1.5
152,462	+				-1.3
152,462	+				-0.0
152,462	+				-1.2
152,462	+				-1.7
152,462	+				+0.2
152,463	-				-0.3
152,463	-				-1.0
152,463	-				-1.0
152,463	-				-1.5
152,463	-				+1.7
152,463	-				-0.7
152,463	-				-0.7
152,495	+		GFF3646	0.14	-0.3
152,495	+		GFF3646	0.14	-2.8
152,496	-		GFF3646	0.14	-0.3
152,496	-		GFF3646	0.14	-0.4
152,496	-		GFF3646	0.14	-1.5
152,549	+		GFF3646	0.23	+0.8
152,549	+		GFF3646	0.23	+0.4
152,630	+		GFF3646	0.37	-0.5
152,630	+		GFF3646	0.37	+0.6
152,630	+		GFF3646	0.37	-1.4
152,630	+		GFF3646	0.37	+3.2
152,630	+		GFF3646	0.37	-1.8
152,630	+		GFF3646	0.37	+0.5
152,630	+		GFF3646	0.37	+1.5
152,630	+		GFF3646	0.37	-1.2
152,630	+		GFF3646	0.37	-1.6
152,630	+		GFF3646	0.37	-0.8
152,630	+		GFF3646	0.37	+2.5
152,630	+		GFF3646	0.37	-1.0
152,631	-		GFF3646	0.37	+1.3
152,631	-		GFF3646	0.37	+0.4
152,631	-		GFF3646	0.37	-2.0
152,631	-		GFF3646	0.37	-0.9
152,660	+		GFF3646	0.42	+1.2
152,660	+		GFF3646	0.42	+1.2
152,660	+		GFF3646	0.42	-1.2
152,660	+		GFF3646	0.42	-3.0
152,660	+		GFF3646	0.42	+0.7
152,661	-		GFF3646	0.42	+0.4
152,661	-		GFF3646	0.42	-0.8
152,661	-		GFF3646	0.42	+0.6
152,661	-		GFF3646	0.42	-1.4
152,816	+		GFF3646	0.69	-0.6
152,817	-		GFF3646	0.69	+0.3
152,817	-		GFF3646	0.69	-1.3
152,817	-		GFF3646	0.69	-3.3
152,817	-		GFF3646	0.69	+0.8
152,889	-		GFF3646	0.81	-0.6
152,889	-		GFF3646	0.81	-0.9
152,889	-		GFF3646	0.81	+0.6
152,889	-		GFF3646	0.81	+1.3
153,000	+				-2.1
153,000	+				+1.9
153,000	+				+0.3
153,000	+				-2.0
153,000	+				+0.3
153,000	+				-2.6
153,000	+				-3.8
153,001	-				-1.4
153,001	-				+2.1
153,001	-				-0.6
153,001	-				-0.3
153,001	-				-1.5
153,001	-				-0.6
153,001	-				-0.8
153,001	-				-1.4
153,001	-				+1.6
153,001	-				-0.4
153,001	-				+0.4
153,001	-				-1.8
153,001	-				-0.5
153,022	+				-2.8
153,022	+				-1.8
153,023	-				+0.5
153,023	-				+0.5
153,120	+		GFF3647	0.17	-2.8
153,120	+		GFF3647	0.17	-0.2
153,120	+		GFF3647	0.17	-1.8
153,120	+		GFF3647	0.17	-2.3
153,120	+		GFF3647	0.17	-0.4
153,120	+		GFF3647	0.17	+0.1
153,120	+		GFF3647	0.17	-2.8
153,121	-		GFF3647	0.17	-0.9
153,121	-		GFF3647	0.17	-0.5
153,121	-		GFF3647	0.17	-0.6
153,121	-		GFF3647	0.17	+0.8
153,121	-		GFF3647	0.17	+0.9
153,121	-		GFF3647	0.17	-0.5
153,121	-		GFF3647	0.17	+1.0
153,178	+		GFF3647	0.25	+2.9
153,178	+		GFF3647	0.25	+0.9
153,178	+		GFF3647	0.25	+1.3
153,179	-		GFF3647	0.25	+0.6
153,179	-		GFF3647	0.25	-1.5
153,179	-		GFF3647	0.25	-1.2
153,179	-		GFF3647	0.25	+0.8
153,179	-		GFF3647	0.25	-0.8
153,207	+		GFF3647	0.29	-0.0
153,207	+		GFF3647	0.29	+0.5
153,208	-		GFF3647	0.30	+1.1
153,208	-		GFF3647	0.30	-3.0
153,208	-		GFF3647	0.30	-2.9
153,208	-		GFF3647	0.30	-1.5
153,208	-		GFF3647	0.30	+0.5
153,208	-		GFF3647	0.30	-2.3
153,436	+		GFF3647	0.61	-3.7
153,436	+		GFF3647	0.61	+0.2
153,436	+		GFF3647	0.61	-0.6
153,436	+		GFF3647	0.61	+0.2
153,437	-		GFF3647	0.62	-0.4
153,437	-		GFF3647	0.62	-1.6
153,437	-		GFF3647	0.62	-3.2
153,437	-		GFF3647	0.62	+1.0
153,437	-		GFF3647	0.62	-2.8
153,460	+		GFF3647	0.65	-0.3
153,460	+		GFF3647	0.65	-0.8
153,460	+		GFF3647	0.65	-1.0
153,460	+		GFF3647	0.65	-0.6
153,460	+		GFF3647	0.65	+1.6
153,460	+		GFF3647	0.65	-0.2
153,460	+		GFF3647	0.65	-1.1
153,460	+		GFF3647	0.65	-1.9
153,461	-		GFF3647	0.65	+0.2
153,461	-		GFF3647	0.65	-0.9
153,461	-		GFF3647	0.65	-2.4
153,461	-		GFF3647	0.65	+0.4
153,541	+		GFF3647	0.76	-1.6
153,541	+		GFF3647	0.76	-1.9
153,541	+		GFF3647	0.76	+1.5
153,542	-		GFF3647	0.76	-0.9
153,753	+				-1.3
153,753	+				+3.3
153,753	+				-1.1
153,754	-				+1.4
153,754	-				+1.9
153,754	-				-0.2
153,754	-				-0.0
153,791	+				-0.8
153,791	+				-1.1
153,791	+				-0.1
153,791	+				+1.3
153,791	+				-0.5
153,791	+				-2.9
153,791	+				-2.4
153,792	-				-1.6
153,792	-				-1.3
153,792	-				+0.2
153,792	-				-0.5
153,815	+				+0.9
153,815	+				+1.0
153,815	+				+0.1
153,815	+				-1.5
153,815	+				-0.6
153,815	+				+0.3
153,815	+				-2.5
153,815	+				+1.0
153,815	+				-1.0
153,816	-				-1.1
153,816	-				-1.4
153,816	-				-0.5
153,816	-				-0.8
153,962	+		GFF3648	0.21	+0.5
153,962	+		GFF3648	0.21	+0.2
153,962	+		GFF3648	0.21	-1.2
153,962	+		GFF3648	0.21	-1.4
153,962	+		GFF3648	0.21	-1.7
153,963	-		GFF3648	0.22	+1.0
153,963	-		GFF3648	0.22	+1.4
153,963	-		GFF3648	0.22	+1.4
153,963	-		GFF3648	0.22	-2.3
153,963	-		GFF3648	0.22	+1.8
153,963	-		GFF3648	0.22	-2.6
153,963	-		GFF3648	0.22	-0.9
154,037	+		GFF3648	0.38	+0.1
154,038	-		GFF3648	0.38	+0.7
154,038	-		GFF3648	0.38	-0.9
154,310	+				+0.9
154,310	+				-0.1
154,311	-				+0.2
154,311	-				+0.4
154,311	-				+1.8
154,311	-				-1.5
154,311	-				-0.3
154,428	+		GFF3649	0.13	+0.5
154,428	+		GFF3649	0.13	-1.9
154,429	-		GFF3649	0.13	+0.2
154,429	-		GFF3649	0.13	-1.1
154,464	+		GFF3649	0.20	+0.9
154,464	+		GFF3649	0.20	+0.2
154,464	+		GFF3649	0.20	-1.1
154,464	+		GFF3649	0.20	+2.5
154,464	+		GFF3649	0.20	+0.5
154,464	+		GFF3649	0.20	+1.2
154,464	+		GFF3649	0.20	+0.5
154,464	+		GFF3649	0.20	-0.1
154,464	+		GFF3649	0.20	-1.4
154,464	+		GFF3649	0.20	+0.5
154,464	+		GFF3649	0.20	-1.9
154,464	+		GFF3649	0.20	-0.6
154,464	+		GFF3649	0.20	-0.1
154,464	+		GFF3649	0.20	-0.5
154,464	+		GFF3649	0.20	+0.5
154,464	+		GFF3649	0.20	+0.9
154,465	-		GFF3649	0.20	+2.5
154,465	-		GFF3649	0.20	-0.1
154,465	-		GFF3649	0.20	-0.1
154,465	-		GFF3649	0.20	+0.2
154,465	-		GFF3649	0.20	-0.5
154,465	-		GFF3649	0.20	+1.5
154,465	-		GFF3649	0.20	+0.9
154,465	-		GFF3649	0.20	-0.5
154,465	-		GFF3649	0.20	-0.8
154,572	+		GFF3649	0.42	-0.3
154,572	+		GFF3649	0.42	+2.5
154,572	+		GFF3649	0.42	-0.3
154,572	+		GFF3649	0.42	-1.1
154,573	-		GFF3649	0.42	-0.2
154,573	-		GFF3649	0.42	+1.5
154,573	-		GFF3649	0.42	-0.5
154,573	-		GFF3649	0.42	+2.5
154,573	-		GFF3649	0.42	-0.8
154,573	-		GFF3649	0.42	+1.3
154,573	-		GFF3649	0.42	+1.5
154,573	-		GFF3649	0.42	-0.6
154,573	-		GFF3649	0.42	+0.5
154,573	-		GFF3649	0.42	+1.5
154,573	-		GFF3649	0.42	+1.5
154,587	+		GFF3649	0.45	+1.5
154,587	+		GFF3649	0.45	+0.9
154,587	+		GFF3649	0.45	-1.3
154,587	+		GFF3649	0.45	+2.5
154,587	+		GFF3649	0.45	+0.2
154,587	+		GFF3649	0.45	-0.8
154,587	+		GFF3649	0.45	-0.6
154,587	+		GFF3649	0.45	-1.5
154,587	+		GFF3649	0.45	+0.5
154,587	+		GFF3649	0.45	+0.2
154,587	+		GFF3649	0.45	+2.5
154,588	-		GFF3649	0.45	+0.9
154,588	-		GFF3649	0.45	+0.9
154,588	-		GFF3649	0.45	+0.5
154,588	-		GFF3649	0.45	-1.8
154,588	-		GFF3649	0.45	+0.5
154,588	-		GFF3649	0.45	-0.5
154,588	-		GFF3649	0.45	-0.9
154,588	-		GFF3649	0.45	-0.1
154,588	-		GFF3649	0.45	+0.5
154,614	+		GFF3649	0.50	+1.5
154,614	+		GFF3649	0.50	-1.2
154,615	-		GFF3649	0.50	+1.5
154,615	-		GFF3649	0.50	-1.5
154,615	-		GFF3649	0.50	-1.6
154,629	+		GFF3649	0.53	+0.5
154,629	+		GFF3649	0.53	-1.8
154,629	+		GFF3649	0.53	-1.5
154,629	+		GFF3649	0.53	+1.5
154,629	+		GFF3649	0.53	-0.1
154,629	+		GFF3649	0.53	-0.1
154,629	+		GFF3649	0.53	-0.9
154,630	-		GFF3649	0.53	-0.8
154,630	-		GFF3649	0.53	+1.5
154,630	-		GFF3649	0.53	+0.4
154,630	-		GFF3649	0.53	+1.5
154,630	-		GFF3649	0.53	+2.5
154,630	-		GFF3649	0.53	+0.5
154,630	-		GFF3649	0.53	-1.6
154,630	-		GFF3649	0.53	-1.5
154,630	-		GFF3649	0.53	-0.1
154,630	-		GFF3649	0.53	+0.2
154,638	+		GFF3649	0.55	-0.6
154,638	+		GFF3649	0.55	+2.5
154,638	+		GFF3649	0.55	-1.4
154,638	+		GFF3649	0.55	-0.3
154,638	+		GFF3649	0.55	-0.8
154,639	-		GFF3649	0.55	-1.1
154,639	-		GFF3649	0.55	-1.3
154,639	-		GFF3649	0.55	-1.3
154,639	-		GFF3649	0.55	-1.1
154,639	-		GFF3649	0.55	-1.3