Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3589 and GFF3590 are separated by 28 nucleotides GFF3590 and GFF3591 are separated by 0 nucleotides
GFF3589 - Transcriptional regulator, LysR family, at 100,250 to 101,164
GFF3589
GFF3590 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 101,193 to 102,107
GFF3590
GFF3591 - Glutathione reductase (EC 1.8.1.7), at 102,108 to 103,466
GFF3591
Position (kb) 101
102
103 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 100.454 kb on + strand, within GFF3589 at 100.454 kb on + strand, within GFF3589 at 100.454 kb on + strand, within GFF3589 at 100.455 kb on - strand, within GFF3589 at 100.691 kb on + strand, within GFF3589 at 100.727 kb on + strand, within GFF3589 at 100.727 kb on + strand, within GFF3589 at 100.727 kb on + strand, within GFF3589 at 100.727 kb on + strand, within GFF3589 at 100.728 kb on - strand, within GFF3589 at 100.728 kb on - strand, within GFF3589 at 100.728 kb on - strand, within GFF3589 at 100.922 kb on + strand, within GFF3589 at 100.922 kb on + strand, within GFF3589 at 100.923 kb on - strand, within GFF3589 at 100.923 kb on - strand, within GFF3589 at 101.057 kb on + strand, within GFF3589 at 101.057 kb on + strand, within GFF3589 at 101.057 kb on + strand, within GFF3589 at 101.058 kb on - strand, within GFF3589 at 101.058 kb on - strand, within GFF3589 at 101.058 kb on - strand, within GFF3589 at 101.058 kb on - strand, within GFF3589 at 101.058 kb on - strand, within GFF3589 at 101.058 kb on - strand, within GFF3589 at 101.058 kb on - strand, within GFF3589 at 101.058 kb on - strand, within GFF3589 at 101.232 kb on + strand at 101.232 kb on + strand at 101.232 kb on + strand at 101.232 kb on + strand at 101.232 kb on + strand at 101.233 kb on - strand at 101.233 kb on - strand at 101.235 kb on + strand at 101.235 kb on + strand at 101.568 kb on + strand, within GFF3590 at 101.568 kb on + strand, within GFF3590 at 101.568 kb on + strand, within GFF3590 at 101.568 kb on + strand, within GFF3590 at 101.569 kb on - strand, within GFF3590 at 101.569 kb on - strand, within GFF3590 at 101.569 kb on - strand, within GFF3590 at 101.569 kb on - strand, within GFF3590 at 101.751 kb on + strand, within GFF3590 at 101.752 kb on - strand, within GFF3590 at 101.752 kb on - strand, within GFF3590 at 101.752 kb on - strand, within GFF3590 at 101.752 kb on - strand, within GFF3590 at 101.752 kb on - strand, within GFF3590 at 101.752 kb on - strand, within GFF3590 at 101.753 kb on + strand, within GFF3590 at 101.934 kb on + strand, within GFF3590 at 101.934 kb on + strand, within GFF3590 at 101.935 kb on - strand, within GFF3590 at 102.409 kb on + strand, within GFF3591 at 102.409 kb on + strand, within GFF3591 at 102.463 kb on + strand, within GFF3591 at 102.571 kb on + strand, within GFF3591 at 102.571 kb on + strand, within GFF3591 at 102.572 kb on - strand, within GFF3591 at 102.572 kb on - strand, within GFF3591 at 102.935 kb on - strand, within GFF3591
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 100,454 + GFF3589 0.22 +0.1 100,454 + GFF3589 0.22 -2.9 100,454 + GFF3589 0.22 +0.3 100,455 - GFF3589 0.22 -0.7 100,691 + GFF3589 0.48 -4.1 100,727 + GFF3589 0.52 -1.4 100,727 + GFF3589 0.52 +2.9 100,727 + GFF3589 0.52 -0.4 100,727 + GFF3589 0.52 +0.8 100,728 - GFF3589 0.52 +0.7 100,728 - GFF3589 0.52 +0.3 100,728 - GFF3589 0.52 -2.0 100,922 + GFF3589 0.73 +1.7 100,922 + GFF3589 0.73 +0.8 100,923 - GFF3589 0.74 +0.2 100,923 - GFF3589 0.74 -2.8 101,057 + GFF3589 0.88 -0.2 101,057 + GFF3589 0.88 +1.3 101,057 + GFF3589 0.88 +0.5 101,058 - GFF3589 0.88 +0.6 101,058 - GFF3589 0.88 +0.6 101,058 - GFF3589 0.88 -0.3 101,058 - GFF3589 0.88 +1.2 101,058 - GFF3589 0.88 -0.3 101,058 - GFF3589 0.88 +0.1 101,058 - GFF3589 0.88 -0.2 101,058 - GFF3589 0.88 -0.2 101,232 + +0.3 101,232 + -1.4 101,232 + -2.8 101,232 + -0.9 101,232 + -1.9 101,233 - -0.0 101,233 - -0.0 101,235 + -0.6 101,235 + +1.6 101,568 + GFF3590 0.41 -0.6 101,568 + GFF3590 0.41 -2.0 101,568 + GFF3590 0.41 -1.0 101,568 + GFF3590 0.41 +2.3 101,569 - GFF3590 0.41 +1.0 101,569 - GFF3590 0.41 -3.0 101,569 - GFF3590 0.41 +2.0 101,569 - GFF3590 0.41 -1.5 101,751 + GFF3590 0.61 -0.8 101,752 - GFF3590 0.61 +2.5 101,752 - GFF3590 0.61 -1.5 101,752 - GFF3590 0.61 +1.0 101,752 - GFF3590 0.61 +1.5 101,752 - GFF3590 0.61 +2.1 101,752 - GFF3590 0.61 -2.8 101,753 + GFF3590 0.61 +0.4 101,934 + GFF3590 0.81 -0.0 101,934 + GFF3590 0.81 +0.3 101,935 - GFF3590 0.81 -0.5 102,409 + GFF3591 0.22 -3.4 102,409 + GFF3591 0.22 -2.1 102,463 + GFF3591 0.26 -0.3 102,571 + GFF3591 0.34 +1.3 102,571 + GFF3591 0.34 -1.4 102,572 - GFF3591 0.34 -0.1 102,572 - GFF3591 0.34 -3.2 102,935 - GFF3591 0.61 -2.7
Or see this region's nucleotide sequence