Strain Fitness in Variovorax sp. SCN45 around GFF3566

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3565 and GFF3566 are separated by 92 nucleotidesGFF3566 and GFF3567 overlap by 10 nucleotides GFF3565 - Acyl-CoA dehydrogenase, at 76,763 to 78,469 GFF3565 GFF3566 - Transcriptional regulator, LysR family, at 78,562 to 79,461 GFF3566 GFF3567 - YihE protein, required for LPS synthesis, at 79,452 to 80,486 GFF3567 Position (kb) 78 79 80Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 77.616 kb on + strand, within GFF3565at 77.616 kb on + strand, within GFF3565at 77.617 kb on - strand, within GFF3565at 77.617 kb on - strand, within GFF3565at 77.617 kb on - strand, within GFF3565at 77.985 kb on + strand, within GFF3565at 77.985 kb on + strand, within GFF3565at 77.985 kb on + strand, within GFF3565at 77.985 kb on + strand, within GFF3565at 77.986 kb on - strand, within GFF3565at 77.986 kb on - strand, within GFF3565at 77.986 kb on - strand, within GFF3565at 78.090 kb on + strand, within GFF3565at 78.090 kb on + strand, within GFF3565at 78.090 kb on + strand, within GFF3565at 78.090 kb on + strand, within GFF3565at 78.090 kb on + strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.091 kb on - strand, within GFF3565at 78.102 kb on + strand, within GFF3565at 78.102 kb on + strand, within GFF3565at 78.102 kb on + strand, within GFF3565at 78.103 kb on - strand, within GFF3565at 78.103 kb on - strand, within GFF3565at 78.103 kb on - strand, within GFF3565at 78.103 kb on - strand, within GFF3565at 78.207 kb on + strand, within GFF3565at 78.207 kb on + strand, within GFF3565at 78.207 kb on + strand, within GFF3565at 78.207 kb on + strand, within GFF3565at 78.207 kb on + strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.208 kb on - strand, within GFF3565at 78.378 kb on + strandat 78.379 kb on - strandat 78.522 kb on + strandat 78.523 kb on - strandat 78.558 kb on - strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.583 kb on + strandat 78.584 kb on - strandat 78.584 kb on - strandat 78.584 kb on - strandat 78.584 kb on - strandat 78.584 kb on - strandat 78.584 kb on - strandat 78.868 kb on + strand, within GFF3566at 78.868 kb on + strand, within GFF3566at 78.868 kb on + strand, within GFF3566at 78.868 kb on + strand, within GFF3566at 79.307 kb on - strand, within GFF3566at 79.366 kb on + strand, within GFF3566at 79.366 kb on + strand, within GFF3566at 79.367 kb on - strand, within GFF3566at 79.367 kb on - strand, within GFF3566at 79.367 kb on - strand, within GFF3566at 79.367 kb on - strand, within GFF3566at 79.460 kb on - strandat 79.460 kb on - strandat 79.523 kb on - strandat 79.523 kb on - strandat 79.597 kb on + strand, within GFF3567at 79.597 kb on + strand, within GFF3567at 79.598 kb on - strand, within GFF3567at 80.147 kb on - strand, within GFF3567at 80.147 kb on - strand, within GFF3567at 80.299 kb on + strand, within GFF3567at 80.299 kb on + strand, within GFF3567at 80.300 kb on - strand, within GFF3567at 80.300 kb on - strand, within GFF3567at 80.335 kb on + strand, within GFF3567at 80.335 kb on + strand, within GFF3567at 80.335 kb on + strand, within GFF3567at 80.336 kb on - strand, within GFF3567at 80.336 kb on - strand, within GFF3567at 80.336 kb on - strand, within GFF3567at 80.345 kb on - strand, within GFF3567at 80.345 kb on - strand, within GFF3567at 80.359 kb on + strand, within GFF3567at 80.359 kb on + strand, within GFF3567at 80.359 kb on + strand, within GFF3567at 80.447 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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77,616 + GFF3565 0.50 +0.3
77,616 + GFF3565 0.50 +0.5
77,617 - GFF3565 0.50 +1.6
77,617 - GFF3565 0.50 +0.2
77,617 - GFF3565 0.50 -0.5
77,985 + GFF3565 0.72 +0.6
77,985 + GFF3565 0.72 -2.7
77,985 + GFF3565 0.72 +0.2
77,985 + GFF3565 0.72 -1.0
77,986 - GFF3565 0.72 -1.4
77,986 - GFF3565 0.72 -0.2
77,986 - GFF3565 0.72 -1.2
78,090 + GFF3565 0.78 +1.1
78,090 + GFF3565 0.78 -1.4
78,090 + GFF3565 0.78 -1.3
78,090 + GFF3565 0.78 -1.9
78,090 + GFF3565 0.78 +1.0
78,091 - GFF3565 0.78 -2.0
78,091 - GFF3565 0.78 -0.3
78,091 - GFF3565 0.78 -0.4
78,091 - GFF3565 0.78 +0.1
78,091 - GFF3565 0.78 -0.9
78,091 - GFF3565 0.78 -0.0
78,091 - GFF3565 0.78 +0.5
78,091 - GFF3565 0.78 -0.9
78,091 - GFF3565 0.78 -1.7
78,102 + GFF3565 0.78 -2.3
78,102 + GFF3565 0.78 +0.7
78,102 + GFF3565 0.78 -1.6
78,103 - GFF3565 0.79 -0.0
78,103 - GFF3565 0.79 -0.2
78,103 - GFF3565 0.79 -0.4
78,103 - GFF3565 0.79 -1.0
78,207 + GFF3565 0.85 -2.7
78,207 + GFF3565 0.85 -0.4
78,207 + GFF3565 0.85 +0.3
78,207 + GFF3565 0.85 +1.3
78,207 + GFF3565 0.85 -1.6
78,208 - GFF3565 0.85 -1.3
78,208 - GFF3565 0.85 +0.4
78,208 - GFF3565 0.85 +2.5
78,208 - GFF3565 0.85 +2.8
78,208 - GFF3565 0.85 -3.3
78,208 - GFF3565 0.85 +1.1
78,208 - GFF3565 0.85 +1.0
78,208 - GFF3565 0.85 -0.3
78,208 - GFF3565 0.85 -0.6
78,378 + +0.6
78,379 - +1.0
78,522 + -2.9
78,523 - +0.4
78,558 - -0.8
78,583 + -1.3
78,583 + -0.9
78,583 + -1.2
78,583 + -0.0
78,583 + -0.9
78,583 + +0.1
78,583 + -1.7
78,583 + +1.1
78,583 + -0.6
78,583 + +0.2
78,584 - +1.2
78,584 - +1.7
78,584 - +0.5
78,584 - -1.0
78,584 - +1.8
78,584 - +1.8
78,868 + GFF3566 0.34 +0.6
78,868 + GFF3566 0.34 +2.5
78,868 + GFF3566 0.34 +0.2
78,868 + GFF3566 0.34 -0.5
79,307 - GFF3566 0.83 -1.6
79,366 + GFF3566 0.89 -2.7
79,366 + GFF3566 0.89 +0.1
79,367 - GFF3566 0.89 +1.0
79,367 - GFF3566 0.89 -2.4
79,367 - GFF3566 0.89 -1.6
79,367 - GFF3566 0.89 +0.7
79,460 - +0.0
79,460 - +0.3
79,523 - +0.2
79,523 - -0.1
79,597 + GFF3567 0.14 +1.1
79,597 + GFF3567 0.14 -1.2
79,598 - GFF3567 0.14 +2.5
80,147 - GFF3567 0.67 +1.1
80,147 - GFF3567 0.67 -1.2
80,299 + GFF3567 0.82 +0.8
80,299 + GFF3567 0.82 -0.7
80,300 - GFF3567 0.82 -1.4
80,300 - GFF3567 0.82 -0.9
80,335 + GFF3567 0.85 -1.9
80,335 + GFF3567 0.85 -0.5
80,335 + GFF3567 0.85 +1.4
80,336 - GFF3567 0.85 -1.3
80,336 - GFF3567 0.85 -0.5
80,336 - GFF3567 0.85 +0.9
80,345 - GFF3567 0.86 -1.6
80,345 - GFF3567 0.86 +1.5
80,359 + GFF3567 0.88 -0.3
80,359 + GFF3567 0.88 -1.5
80,359 + GFF3567 0.88 -2.5
80,447 - +0.5

Or see this region's nucleotide sequence