Strain Fitness in Variovorax sp. SCN45 around GFF3549

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3546 and GFF3548 overlap by 1 nucleotidesGFF3548 and GFF3549 are separated by 52 nucleotidesGFF3549 and GFF3550 are separated by 61 nucleotides GFF3546 - Chaperone protein HtpG, at 51,686 to 53,722 GFF3546 GFF3548 - hypothetical protein, at 53,722 to 54,333 GFF3548 GFF3549 - FIG01127675: hypothetical protein, at 54,386 to 55,738 GFF3549 GFF3550 - hypothetical protein, at 55,800 to 57,335 GFF3550 Position (kb) 54 55 56Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 53.690 kb on + strandat 53.690 kb on + strandat 53.690 kb on + strandat 53.691 kb on - strandat 53.691 kb on - strandat 53.691 kb on - strandat 53.691 kb on - strandat 53.691 kb on - strandat 53.806 kb on + strand, within GFF3548at 53.807 kb on - strand, within GFF3548at 53.807 kb on - strand, within GFF3548at 53.807 kb on - strand, within GFF3548at 54.013 kb on + strand, within GFF3548at 54.013 kb on + strand, within GFF3548at 54.013 kb on + strand, within GFF3548at 54.013 kb on + strand, within GFF3548at 54.013 kb on + strand, within GFF3548at 54.013 kb on + strand, within GFF3548at 54.013 kb on + strand, within GFF3548at 54.013 kb on + strand, within GFF3548at 54.014 kb on - strand, within GFF3548at 54.014 kb on - strand, within GFF3548at 54.014 kb on - strand, within GFF3548at 54.096 kb on + strand, within GFF3548at 54.115 kb on + strand, within GFF3548at 54.115 kb on + strand, within GFF3548at 54.116 kb on - strand, within GFF3548at 54.116 kb on - strand, within GFF3548at 54.116 kb on - strand, within GFF3548at 54.116 kb on - strand, within GFF3548at 54.256 kb on + strand, within GFF3548at 54.256 kb on + strand, within GFF3548at 54.256 kb on + strand, within GFF3548at 54.257 kb on - strand, within GFF3548at 54.257 kb on - strand, within GFF3548at 54.257 kb on - strand, within GFF3548at 54.257 kb on - strand, within GFF3548at 54.257 kb on - strand, within GFF3548at 54.257 kb on - strand, within GFF3548at 54.540 kb on - strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.218 kb on + strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.219 kb on - strand, within GFF3549at 55.266 kb on - strand, within GFF3549at 55.337 kb on + strand, within GFF3549at 55.337 kb on + strand, within GFF3549at 55.337 kb on + strand, within GFF3549at 55.338 kb on - strand, within GFF3549at 55.338 kb on - strand, within GFF3549at 55.338 kb on - strand, within GFF3549at 55.735 kb on - strandat 56.275 kb on - strand, within GFF3550at 56.275 kb on - strand, within GFF3550at 56.733 kb on + strand, within GFF3550at 56.733 kb on + strand, within GFF3550at 56.734 kb on - strand, within GFF3550

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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53,690 + +0.1
53,690 + -1.2
53,690 + +0.2
53,691 - +0.2
53,691 - -1.4
53,691 - -3.0
53,691 - -4.0
53,691 - -1.2
53,806 + GFF3548 0.14 +0.4
53,807 - GFF3548 0.14 -1.6
53,807 - GFF3548 0.14 +1.6
53,807 - GFF3548 0.14 +0.1
54,013 + GFF3548 0.48 -0.9
54,013 + GFF3548 0.48 -0.8
54,013 + GFF3548 0.48 -0.8
54,013 + GFF3548 0.48 +1.0
54,013 + GFF3548 0.48 +0.2
54,013 + GFF3548 0.48 -1.6
54,013 + GFF3548 0.48 -0.8
54,013 + GFF3548 0.48 -1.1
54,014 - GFF3548 0.48 -0.3
54,014 - GFF3548 0.48 -0.6
54,014 - GFF3548 0.48 +2.2
54,096 + GFF3548 0.61 +1.4
54,115 + GFF3548 0.64 -0.0
54,115 + GFF3548 0.64 +0.5
54,116 - GFF3548 0.64 -1.7
54,116 - GFF3548 0.64 +0.2
54,116 - GFF3548 0.64 +0.7
54,116 - GFF3548 0.64 +0.2
54,256 + GFF3548 0.87 -0.9
54,256 + GFF3548 0.87 -0.6
54,256 + GFF3548 0.87 +0.1
54,257 - GFF3548 0.87 +0.5
54,257 - GFF3548 0.87 -0.8
54,257 - GFF3548 0.87 -0.7
54,257 - GFF3548 0.87 -0.6
54,257 - GFF3548 0.87 -0.4
54,257 - GFF3548 0.87 +1.0
54,540 - GFF3549 0.11 +0.5
55,218 + GFF3549 0.61 -2.3
55,218 + GFF3549 0.61 -2.2
55,218 + GFF3549 0.61 +0.3
55,218 + GFF3549 0.61 +0.5
55,218 + GFF3549 0.61 -1.0
55,218 + GFF3549 0.61 -0.8
55,218 + GFF3549 0.61 -0.4
55,218 + GFF3549 0.61 -1.6
55,218 + GFF3549 0.61 -1.3
55,218 + GFF3549 0.61 -2.5
55,218 + GFF3549 0.61 +0.7
55,218 + GFF3549 0.61 -1.3
55,218 + GFF3549 0.61 -3.1
55,218 + GFF3549 0.61 +1.3
55,218 + GFF3549 0.61 +0.2
55,218 + GFF3549 0.61 -1.3
55,218 + GFF3549 0.61 +0.0
55,218 + GFF3549 0.61 -0.1
55,218 + GFF3549 0.61 +2.1
55,218 + GFF3549 0.61 -0.8
55,218 + GFF3549 0.61 +1.0
55,218 + GFF3549 0.61 +0.7
55,218 + GFF3549 0.61 -0.5
55,218 + GFF3549 0.61 +2.2
55,218 + GFF3549 0.61 -0.6
55,218 + GFF3549 0.61 -0.8
55,219 - GFF3549 0.62 -3.9
55,219 - GFF3549 0.62 -2.7
55,219 - GFF3549 0.62 +2.3
55,219 - GFF3549 0.62 +0.5
55,219 - GFF3549 0.62 -0.0
55,219 - GFF3549 0.62 -0.3
55,219 - GFF3549 0.62 +1.3
55,219 - GFF3549 0.62 +1.5
55,219 - GFF3549 0.62 +1.2
55,219 - GFF3549 0.62 -0.9
55,219 - GFF3549 0.62 -1.6
55,219 - GFF3549 0.62 +0.5
55,219 - GFF3549 0.62 -0.7
55,219 - GFF3549 0.62 -1.6
55,219 - GFF3549 0.62 -0.0
55,219 - GFF3549 0.62 +1.3
55,219 - GFF3549 0.62 -0.6
55,219 - GFF3549 0.62 -2.7
55,219 - GFF3549 0.62 -0.3
55,219 - GFF3549 0.62 -0.9
55,219 - GFF3549 0.62 +0.5
55,219 - GFF3549 0.62 -0.8
55,219 - GFF3549 0.62 +1.3
55,219 - GFF3549 0.62 +2.1
55,219 - GFF3549 0.62 +0.4
55,219 - GFF3549 0.62 -0.6
55,219 - GFF3549 0.62 -0.1
55,219 - GFF3549 0.62 +0.9
55,219 - GFF3549 0.62 -0.4
55,219 - GFF3549 0.62 +3.4
55,219 - GFF3549 0.62 +0.9
55,219 - GFF3549 0.62 -0.3
55,219 - GFF3549 0.62 -1.0
55,219 - GFF3549 0.62 +0.5
55,266 - GFF3549 0.65 -0.7
55,337 + GFF3549 0.70 -0.3
55,337 + GFF3549 0.70 -0.3
55,337 + GFF3549 0.70 -0.0
55,338 - GFF3549 0.70 +0.8
55,338 - GFF3549 0.70 -0.4
55,338 - GFF3549 0.70 -0.5
55,735 - -1.1
56,275 - GFF3550 0.31 +0.3
56,275 - GFF3550 0.31 -1.4
56,733 + GFF3550 0.61 +0.2
56,733 + GFF3550 0.61 +0.2
56,734 - GFF3550 0.61 -0.9

Or see this region's nucleotide sequence