Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3478 and GFF3479 are separated by 103 nucleotides GFF3479 and GFF3480 are separated by 105 nucleotides GFF3480 and GFF3481 overlap by 8 nucleotides
GFF3478 - Cytochrome c peroxidase (EC 1.11.1.5), at 300,407 to 301,759
GFF3478
GFF3479 - no description, at 301,863 to 303,020
GFF3479
GFF3480 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 303,126 to 303,830
GFF3480
GFF3481 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 303,823 to 304,593
GFF3481
Position (kb) 301
302
303
304 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 300.863 kb on + strand, within GFF3478 at 300.864 kb on - strand, within GFF3478 at 300.864 kb on - strand, within GFF3478 at 300.864 kb on - strand, within GFF3478 at 301.115 kb on + strand, within GFF3478 at 301.115 kb on + strand, within GFF3478 at 301.115 kb on + strand, within GFF3478 at 301.116 kb on - strand, within GFF3478 at 301.116 kb on - strand, within GFF3478 at 301.116 kb on - strand, within GFF3478 at 301.163 kb on + strand, within GFF3478 at 301.164 kb on - strand, within GFF3478 at 301.164 kb on - strand, within GFF3478 at 301.311 kb on - strand, within GFF3478 at 301.436 kb on + strand, within GFF3478 at 301.436 kb on + strand, within GFF3478 at 301.436 kb on + strand, within GFF3478 at 301.529 kb on + strand, within GFF3478 at 301.529 kb on + strand, within GFF3478 at 301.529 kb on + strand, within GFF3478 at 301.529 kb on + strand, within GFF3478 at 301.530 kb on - strand, within GFF3478 at 301.530 kb on - strand, within GFF3478 at 301.562 kb on + strand, within GFF3478 at 301.563 kb on - strand, within GFF3478 at 301.563 kb on - strand, within GFF3478 at 301.601 kb on + strand, within GFF3478 at 301.601 kb on + strand, within GFF3478 at 301.602 kb on - strand, within GFF3478 at 301.602 kb on - strand, within GFF3478 at 301.602 kb on - strand, within GFF3478 at 301.602 kb on - strand, within GFF3478 at 301.724 kb on + strand at 301.724 kb on + strand at 301.724 kb on + strand at 301.724 kb on + strand at 301.725 kb on - strand at 301.725 kb on - strand at 301.725 kb on - strand at 301.725 kb on - strand at 301.725 kb on - strand at 301.725 kb on - strand at 301.757 kb on + strand at 301.758 kb on - strand at 301.758 kb on - strand at 301.803 kb on + strand at 301.803 kb on + strand at 301.803 kb on + strand at 302.049 kb on + strand, within GFF3479 at 302.049 kb on + strand, within GFF3479 at 302.050 kb on - strand, within GFF3479 at 302.050 kb on - strand, within GFF3479 at 302.340 kb on + strand, within GFF3479 at 302.341 kb on - strand, within GFF3479 at 302.341 kb on - strand, within GFF3479 at 302.341 kb on - strand, within GFF3479 at 302.643 kb on + strand, within GFF3479 at 302.644 kb on - strand, within GFF3479 at 302.742 kb on + strand, within GFF3479 at 302.742 kb on + strand, within GFF3479 at 302.743 kb on - strand, within GFF3479 at 302.743 kb on - strand, within GFF3479 at 302.743 kb on - strand, within GFF3479 at 302.743 kb on - strand, within GFF3479 at 302.743 kb on - strand, within GFF3479 at 302.760 kb on + strand, within GFF3479 at 302.820 kb on + strand, within GFF3479 at 302.820 kb on + strand, within GFF3479 at 302.820 kb on + strand, within GFF3479 at 302.820 kb on + strand, within GFF3479 at 302.821 kb on - strand, within GFF3479 at 302.821 kb on - strand, within GFF3479 at 302.821 kb on - strand, within GFF3479 at 302.821 kb on - strand, within GFF3479 at 302.821 kb on - strand, within GFF3479 at 302.821 kb on - strand, within GFF3479 at 302.943 kb on + strand at 302.943 kb on + strand at 302.943 kb on + strand at 302.943 kb on + strand at 302.944 kb on - strand at 302.944 kb on - strand at 302.944 kb on - strand at 303.018 kb on + strand at 303.018 kb on + strand at 303.018 kb on + strand at 303.018 kb on + strand at 303.018 kb on + strand at 303.018 kb on + strand at 303.019 kb on - strand at 303.019 kb on - strand at 303.019 kb on - strand at 303.019 kb on - strand at 303.019 kb on - strand at 303.028 kb on - strand at 303.028 kb on - strand at 303.157 kb on - strand at 303.157 kb on - strand at 303.157 kb on - strand at 303.157 kb on - strand at 303.448 kb on + strand, within GFF3480 at 303.448 kb on + strand, within GFF3480 at 303.449 kb on - strand, within GFF3480 at 303.449 kb on - strand, within GFF3480 at 303.449 kb on - strand, within GFF3480 at 303.487 kb on + strand, within GFF3480 at 303.488 kb on - strand, within GFF3480 at 303.851 kb on + strand at 303.851 kb on + strand at 303.851 kb on + strand at 303.852 kb on - strand at 303.852 kb on - strand at 303.852 kb on - strand at 303.852 kb on - strand at 303.852 kb on - strand at 303.852 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 300,863 + GFF3478 0.34 -1.9 300,864 - GFF3478 0.34 -2.4 300,864 - GFF3478 0.34 +0.1 300,864 - GFF3478 0.34 +0.9 301,115 + GFF3478 0.52 -0.4 301,115 + GFF3478 0.52 +1.6 301,115 + GFF3478 0.52 -1.1 301,116 - GFF3478 0.52 -0.3 301,116 - GFF3478 0.52 -1.1 301,116 - GFF3478 0.52 -0.7 301,163 + GFF3478 0.56 -0.1 301,164 - GFF3478 0.56 +0.3 301,164 - GFF3478 0.56 +0.2 301,311 - GFF3478 0.67 -0.5 301,436 + GFF3478 0.76 -2.9 301,436 + GFF3478 0.76 +0.3 301,436 + GFF3478 0.76 -2.7 301,529 + GFF3478 0.83 +1.6 301,529 + GFF3478 0.83 -0.9 301,529 + GFF3478 0.83 -2.2 301,529 + GFF3478 0.83 +1.0 301,530 - GFF3478 0.83 -1.3 301,530 - GFF3478 0.83 -1.0 301,562 + GFF3478 0.85 +1.4 301,563 - GFF3478 0.85 +1.0 301,563 - GFF3478 0.85 +3.0 301,601 + GFF3478 0.88 +0.9 301,601 + GFF3478 0.88 -3.0 301,602 - GFF3478 0.88 -0.9 301,602 - GFF3478 0.88 -2.0 301,602 - GFF3478 0.88 +0.9 301,602 - GFF3478 0.88 +1.1 301,724 + +0.3 301,724 + +1.1 301,724 + -0.7 301,724 + +1.3 301,725 - +1.1 301,725 - -1.0 301,725 - -0.7 301,725 - +0.8 301,725 - +0.6 301,725 - -1.2 301,757 + +0.7 301,758 - -1.0 301,758 - -1.8 301,803 + -0.1 301,803 + -0.5 301,803 + -1.0 302,049 + GFF3479 0.16 -2.4 302,049 + GFF3479 0.16 +0.3 302,050 - GFF3479 0.16 +2.6 302,050 - GFF3479 0.16 -1.3 302,340 + GFF3479 0.41 -2.3 302,341 - GFF3479 0.41 +1.6 302,341 - GFF3479 0.41 -0.7 302,341 - GFF3479 0.41 -1.7 302,643 + GFF3479 0.67 +0.8 302,644 - GFF3479 0.67 -2.3 302,742 + GFF3479 0.76 +1.9 302,742 + GFF3479 0.76 +0.7 302,743 - GFF3479 0.76 +1.0 302,743 - GFF3479 0.76 -2.5 302,743 - GFF3479 0.76 -3.0 302,743 - GFF3479 0.76 -0.4 302,743 - GFF3479 0.76 -1.1 302,760 + GFF3479 0.77 +0.3 302,820 + GFF3479 0.83 -1.9 302,820 + GFF3479 0.83 +0.6 302,820 + GFF3479 0.83 +0.6 302,820 + GFF3479 0.83 -1.0 302,821 - GFF3479 0.83 -0.4 302,821 - GFF3479 0.83 +1.1 302,821 - GFF3479 0.83 -0.5 302,821 - GFF3479 0.83 -3.7 302,821 - GFF3479 0.83 -1.1 302,821 - GFF3479 0.83 +1.6 302,943 + -1.7 302,943 + -1.2 302,943 + -2.3 302,943 + -0.5 302,944 - -1.0 302,944 - -2.5 302,944 - +0.0 303,018 + +0.2 303,018 + -1.1 303,018 + +1.1 303,018 + +0.5 303,018 + -1.6 303,018 + -2.8 303,019 - -1.5 303,019 - -1.0 303,019 - +0.5 303,019 - +0.1 303,019 - +0.5 303,028 - -0.8 303,028 - +0.3 303,157 - -0.6 303,157 - -0.2 303,157 - -2.0 303,157 - +0.6 303,448 + GFF3480 0.46 +0.1 303,448 + GFF3480 0.46 -1.5 303,449 - GFF3480 0.46 -0.4 303,449 - GFF3480 0.46 -0.2 303,449 - GFF3480 0.46 +0.0 303,487 + GFF3480 0.51 -0.1 303,488 - GFF3480 0.51 -2.5 303,851 + -2.1 303,851 + +0.7 303,851 + +0.4 303,852 - +1.3 303,852 - -1.4 303,852 - +0.0 303,852 - +0.6 303,852 - -0.0 303,852 - -0.4
Or see this region's nucleotide sequence