Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3471 and GFF3472 overlap by 4 nucleotides GFF3472 and GFF3473 are separated by 110 nucleotides GFF3473 and GFF3474 are separated by 73 nucleotides
GFF3471 - hypothetical protein, at 291,821 to 292,321
GFF3471
GFF3472 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 292,318 to 292,761
GFF3472
GFF3473 - no description, at 292,872 to 293,801
GFF3473
GFF3474 - Alkyl sulfatase and related hydrolases, MBL-fold metallo-hydrolase superfamily, at 293,875 to 295,866
GFF3474
Position (kb) 292
293
294 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 291.963 kb on + strand, within GFF3471 at 291.963 kb on + strand, within GFF3471 at 291.964 kb on - strand, within GFF3471 at 291.964 kb on - strand, within GFF3471 at 291.964 kb on - strand, within GFF3471 at 292.062 kb on + strand, within GFF3471 at 292.159 kb on + strand, within GFF3471 at 292.161 kb on + strand, within GFF3471 at 292.161 kb on + strand, within GFF3471 at 292.161 kb on + strand, within GFF3471 at 292.161 kb on + strand, within GFF3471 at 292.161 kb on + strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.337 kb on + strand at 292.595 kb on + strand, within GFF3472 at 292.596 kb on - strand, within GFF3472 at 292.822 kb on - strand at 292.952 kb on + strand at 292.953 kb on - strand at 292.978 kb on + strand, within GFF3473 at 292.978 kb on + strand, within GFF3473 at 292.979 kb on - strand, within GFF3473 at 292.979 kb on - strand, within GFF3473 at 293.647 kb on + strand, within GFF3473 at 293.830 kb on + strand at 293.831 kb on - strand at 294.235 kb on + strand, within GFF3474 at 294.235 kb on + strand, within GFF3474 at 294.236 kb on - strand, within GFF3474 at 294.349 kb on + strand, within GFF3474 at 294.349 kb on + strand, within GFF3474 at 294.349 kb on + strand, within GFF3474 at 294.350 kb on - strand, within GFF3474 at 294.350 kb on - strand, within GFF3474 at 294.350 kb on - strand, within GFF3474 at 294.350 kb on - strand, within GFF3474 at 294.350 kb on - strand, within GFF3474 at 294.352 kb on + strand, within GFF3474 at 294.353 kb on - strand, within GFF3474 at 294.353 kb on - strand, within GFF3474 at 294.391 kb on + strand, within GFF3474 at 294.391 kb on + strand, within GFF3474 at 294.392 kb on - strand, within GFF3474 at 294.392 kb on - strand, within GFF3474 at 294.392 kb on - strand, within GFF3474 at 294.553 kb on + strand, within GFF3474 at 294.754 kb on + strand, within GFF3474 at 294.754 kb on + strand, within GFF3474 at 294.755 kb on - strand, within GFF3474 at 294.755 kb on - strand, within GFF3474 at 294.755 kb on - strand, within GFF3474 at 294.755 kb on - strand, within GFF3474 at 294.755 kb on - strand, within GFF3474
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 291,963 + GFF3471 0.28 +2.2 291,963 + GFF3471 0.28 -0.9 291,964 - GFF3471 0.29 +0.5 291,964 - GFF3471 0.29 -2.9 291,964 - GFF3471 0.29 -1.5 292,062 + GFF3471 0.48 +0.9 292,159 + GFF3471 0.67 -0.4 292,161 + GFF3471 0.68 -0.4 292,161 + GFF3471 0.68 +1.2 292,161 + GFF3471 0.68 -0.3 292,161 + GFF3471 0.68 -0.8 292,161 + GFF3471 0.68 -0.9 292,162 - GFF3471 0.68 +0.0 292,162 - GFF3471 0.68 +0.6 292,162 - GFF3471 0.68 -0.6 292,162 - GFF3471 0.68 +2.6 292,162 - GFF3471 0.68 +0.2 292,162 - GFF3471 0.68 -1.1 292,337 + +0.0 292,595 + GFF3472 0.62 +1.0 292,596 - GFF3472 0.63 -0.6 292,822 - -2.6 292,952 + -0.4 292,953 - -0.7 292,978 + GFF3473 0.11 -0.1 292,978 + GFF3473 0.11 +0.5 292,979 - GFF3473 0.12 -0.9 292,979 - GFF3473 0.12 +1.1 293,647 + GFF3473 0.83 -1.5 293,830 + +0.3 293,831 - -0.6 294,235 + GFF3474 0.18 -2.1 294,235 + GFF3474 0.18 +1.8 294,236 - GFF3474 0.18 -1.8 294,349 + GFF3474 0.24 +0.1 294,349 + GFF3474 0.24 -2.5 294,349 + GFF3474 0.24 +1.1 294,350 - GFF3474 0.24 +1.4 294,350 - GFF3474 0.24 -0.5 294,350 - GFF3474 0.24 -1.7 294,350 - GFF3474 0.24 +0.9 294,350 - GFF3474 0.24 -1.1 294,352 + GFF3474 0.24 -0.7 294,353 - GFF3474 0.24 -0.9 294,353 - GFF3474 0.24 +1.3 294,391 + GFF3474 0.26 -1.6 294,391 + GFF3474 0.26 +0.9 294,392 - GFF3474 0.26 -2.2 294,392 - GFF3474 0.26 -3.4 294,392 - GFF3474 0.26 -0.2 294,553 + GFF3474 0.34 +0.6 294,754 + GFF3474 0.44 -3.0 294,754 + GFF3474 0.44 -2.0 294,755 - GFF3474 0.44 -0.9 294,755 - GFF3474 0.44 +1.0 294,755 - GFF3474 0.44 +0.3 294,755 - GFF3474 0.44 +0.8 294,755 - GFF3474 0.44 -2.7
Or see this region's nucleotide sequence