Strain Fitness in Variovorax sp. SCN45 around GFF3440

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3439 and GFF3440 are separated by 60 nucleotidesGFF3440 and GFF3441 are separated by 5 nucleotidesGFF3441 and GFF3442 are separated by 86 nucleotides GFF3439 - L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17), at 262,230 to 263,612 GFF3439 GFF3440 - FIG00460300: hypothetical protein, at 263,673 to 264,503 GFF3440 GFF3441 - Hypothetical protein VC0266 (sugar utilization related?), at 264,509 to 265,087 GFF3441 GFF3442 - RidA/YER057c/UK114 superfamily protein, at 265,174 to 265,578 GFF3442 Position (kb) 263 264 265Strain fitness (log2 ratio) -2 -1 0 1 2 3at 263.142 kb on + strand, within GFF3439at 263.142 kb on + strand, within GFF3439at 263.142 kb on + strand, within GFF3439at 263.143 kb on - strand, within GFF3439at 263.143 kb on - strand, within GFF3439at 263.145 kb on + strand, within GFF3439at 263.146 kb on - strand, within GFF3439at 263.223 kb on + strand, within GFF3439at 263.223 kb on + strand, within GFF3439at 263.223 kb on + strand, within GFF3439at 263.224 kb on - strand, within GFF3439at 263.224 kb on - strand, within GFF3439at 263.224 kb on - strand, within GFF3439at 263.224 kb on - strand, within GFF3439at 263.224 kb on - strand, within GFF3439at 263.224 kb on - strand, within GFF3439at 263.499 kb on + strandat 263.499 kb on + strandat 263.499 kb on + strandat 263.499 kb on + strandat 263.499 kb on + strandat 263.499 kb on + strandat 263.500 kb on - strandat 263.562 kb on + strandat 263.562 kb on + strandat 263.562 kb on + strandat 263.562 kb on + strandat 263.562 kb on + strandat 263.562 kb on + strandat 263.563 kb on - strandat 263.563 kb on - strandat 263.563 kb on - strandat 263.647 kb on + strandat 263.648 kb on - strandat 263.648 kb on - strandat 263.838 kb on + strand, within GFF3440at 263.839 kb on - strand, within GFF3440at 263.865 kb on + strand, within GFF3440at 263.865 kb on + strand, within GFF3440at 263.865 kb on + strand, within GFF3440at 263.866 kb on - strand, within GFF3440at 263.866 kb on - strand, within GFF3440at 263.866 kb on - strand, within GFF3440at 263.866 kb on - strand, within GFF3440at 263.866 kb on - strand, within GFF3440at 263.866 kb on - strand, within GFF3440at 264.192 kb on + strand, within GFF3440at 264.192 kb on + strand, within GFF3440at 264.193 kb on - strand, within GFF3440at 264.219 kb on + strand, within GFF3440at 264.219 kb on + strand, within GFF3440at 264.220 kb on - strand, within GFF3440at 264.722 kb on + strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.723 kb on - strand, within GFF3441at 264.758 kb on + strand, within GFF3441at 264.759 kb on - strand, within GFF3441at 264.759 kb on - strand, within GFF3441at 264.873 kb on + strand, within GFF3441at 264.873 kb on + strand, within GFF3441at 264.874 kb on - strand, within GFF3441at 264.874 kb on - strand, within GFF3441at 264.882 kb on - strand, within GFF3441at 264.954 kb on - strand, within GFF3441at 265.097 kb on + strandat 265.098 kb on - strandat 265.098 kb on - strandat 265.098 kb on - strandat 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.270 kb on + strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.271 kb on - strand, within GFF3442at 265.423 kb on + strand, within GFF3442at 265.423 kb on + strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.424 kb on - strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.465 kb on + strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.466 kb on - strand, within GFF3442at 265.466 kb on - strand, within GFF3442

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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263,142 + GFF3439 0.66 -0.1
263,142 + GFF3439 0.66 -1.0
263,142 + GFF3439 0.66 -1.5
263,143 - GFF3439 0.66 +0.0
263,143 - GFF3439 0.66 +0.9
263,145 + GFF3439 0.66 +0.7
263,146 - GFF3439 0.66 -1.2
263,223 + GFF3439 0.72 -1.2
263,223 + GFF3439 0.72 -1.0
263,223 + GFF3439 0.72 -2.3
263,224 - GFF3439 0.72 +1.5
263,224 - GFF3439 0.72 -1.5
263,224 - GFF3439 0.72 -0.2
263,224 - GFF3439 0.72 +1.4
263,224 - GFF3439 0.72 -0.4
263,224 - GFF3439 0.72 -1.0
263,499 + +1.6
263,499 + +0.3
263,499 + -0.9
263,499 + -0.8
263,499 + +1.8
263,499 + -0.8
263,500 - +2.0
263,562 + -2.0
263,562 + +0.4
263,562 + +0.4
263,562 + -0.8
263,562 + -1.2
263,562 + +0.3
263,563 - +1.0
263,563 - -1.8
263,563 - +0.8
263,647 + -0.8
263,648 - -1.1
263,648 - -0.9
263,838 + GFF3440 0.20 +0.1
263,839 - GFF3440 0.20 +1.8
263,865 + GFF3440 0.23 -0.7
263,865 + GFF3440 0.23 +2.6
263,865 + GFF3440 0.23 -2.3
263,866 - GFF3440 0.23 -2.5
263,866 - GFF3440 0.23 -0.6
263,866 - GFF3440 0.23 -0.6
263,866 - GFF3440 0.23 -0.0
263,866 - GFF3440 0.23 +1.6
263,866 - GFF3440 0.23 +0.3
264,192 + GFF3440 0.62 +0.5
264,192 + GFF3440 0.62 +0.9
264,193 - GFF3440 0.63 +0.4
264,219 + GFF3440 0.66 +0.7
264,219 + GFF3440 0.66 +1.9
264,220 - GFF3440 0.66 -0.8
264,722 + GFF3441 0.37 -0.5
264,723 - GFF3441 0.37 +0.3
264,723 - GFF3441 0.37 -1.8
264,723 - GFF3441 0.37 -0.1
264,723 - GFF3441 0.37 -1.4
264,723 - GFF3441 0.37 -0.6
264,758 + GFF3441 0.43 -0.3
264,759 - GFF3441 0.43 -0.5
264,759 - GFF3441 0.43 -0.6
264,873 + GFF3441 0.63 +0.0
264,873 + GFF3441 0.63 -0.6
264,874 - GFF3441 0.63 +0.8
264,874 - GFF3441 0.63 +0.0
264,882 - GFF3441 0.64 -0.2
264,954 - GFF3441 0.77 +0.3
265,097 + +1.3
265,098 - -1.9
265,098 - +1.0
265,098 - +0.5
265,270 + GFF3442 0.24 -1.3
265,270 + GFF3442 0.24 +0.2
265,270 + GFF3442 0.24 +1.4
265,270 + GFF3442 0.24 +1.2
265,270 + GFF3442 0.24 -1.1
265,270 + GFF3442 0.24 +0.6
265,270 + GFF3442 0.24 +0.9
265,270 + GFF3442 0.24 -0.9
265,270 + GFF3442 0.24 -0.1
265,270 + GFF3442 0.24 +0.4
265,271 - GFF3442 0.24 -2.4
265,271 - GFF3442 0.24 -2.0
265,271 - GFF3442 0.24 -1.4
265,271 - GFF3442 0.24 +2.6
265,271 - GFF3442 0.24 -2.0
265,271 - GFF3442 0.24 -0.2
265,271 - GFF3442 0.24 +1.9
265,271 - GFF3442 0.24 -1.2
265,271 - GFF3442 0.24 -0.1
265,423 + GFF3442 0.61 -2.0
265,423 + GFF3442 0.61 -0.5
265,424 - GFF3442 0.62 +1.3
265,424 - GFF3442 0.62 +0.4
265,424 - GFF3442 0.62 +0.8
265,424 - GFF3442 0.62 -0.2
265,424 - GFF3442 0.62 -1.0
265,465 + GFF3442 0.72 +1.0
265,465 + GFF3442 0.72 -1.7
265,465 + GFF3442 0.72 +1.7
265,465 + GFF3442 0.72 -1.6
265,465 + GFF3442 0.72 -0.3
265,465 + GFF3442 0.72 -0.9
265,465 + GFF3442 0.72 +0.1
265,465 + GFF3442 0.72 -0.9
265,465 + GFF3442 0.72 -0.6
265,465 + GFF3442 0.72 +0.6
265,466 - GFF3442 0.72 +3.7
265,466 - GFF3442 0.72 -1.3
265,466 - GFF3442 0.72 -0.4
265,466 - GFF3442 0.72 +1.1
265,466 - GFF3442 0.72 -0.8

Or see this region's nucleotide sequence