Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3427 and GFF3428 are separated by 4 nucleotides GFF3428 and GFF3429 are separated by 16 nucleotides GFF3429 and GFF3430 are separated by 7 nucleotides
GFF3427 - FIG01006093: hypothetical protein, at 250,970 to 251,479
GFF3427
GFF3428 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-), at 251,484 to 252,296
GFF3428
GFF3429 - Transcriptional regulator, AraC family, at 252,313 to 253,233
GFF3429
GFF3430 - Transcriptional regulator, LysR family, at 253,241 to 254,143
GFF3430
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 251.436 kb on + strand at 251.444 kb on + strand at 251.445 kb on - strand at 251.445 kb on - strand at 251.511 kb on + strand at 251.512 kb on - strand at 251.637 kb on + strand, within GFF3428 at 251.676 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.685 kb on + strand, within GFF3428 at 251.686 kb on - strand, within GFF3428 at 251.686 kb on - strand, within GFF3428 at 251.686 kb on - strand, within GFF3428 at 252.060 kb on + strand, within GFF3428 at 252.294 kb on + strand at 252.305 kb on + strand at 252.305 kb on + strand at 252.731 kb on + strand, within GFF3429 at 252.731 kb on + strand, within GFF3429 at 252.732 kb on - strand, within GFF3429 at 252.740 kb on + strand, within GFF3429 at 252.741 kb on - strand, within GFF3429 at 253.058 kb on + strand, within GFF3429 at 253.058 kb on + strand, within GFF3429 at 253.109 kb on + strand, within GFF3429 at 253.109 kb on + strand, within GFF3429 at 253.110 kb on - strand, within GFF3429 at 253.110 kb on - strand, within GFF3429 at 253.326 kb on + strand at 253.326 kb on + strand at 253.326 kb on + strand at 253.326 kb on + strand at 253.327 kb on - strand at 253.327 kb on - strand at 253.327 kb on - strand at 253.329 kb on + strand at 253.329 kb on + strand at 253.329 kb on + strand at 253.329 kb on + strand at 253.329 kb on + strand at 253.329 kb on + strand at 253.329 kb on + strand at 253.329 kb on + strand at 253.330 kb on - strand at 253.330 kb on - strand at 253.330 kb on - strand at 253.330 kb on - strand at 253.330 kb on - strand at 253.470 kb on + strand, within GFF3430 at 253.470 kb on + strand, within GFF3430 at 253.471 kb on - strand, within GFF3430 at 253.704 kb on + strand, within GFF3430 at 253.704 kb on + strand, within GFF3430 at 253.705 kb on - strand, within GFF3430 at 253.705 kb on - strand, within GFF3430 at 253.938 kb on + strand, within GFF3430 at 253.938 kb on + strand, within GFF3430 at 253.938 kb on + strand, within GFF3430 at 253.938 kb on + strand, within GFF3430 at 253.938 kb on + strand, within GFF3430 at 254.076 kb on + strand at 254.076 kb on + strand at 254.076 kb on + strand at 254.076 kb on + strand at 254.076 kb on + strand at 254.077 kb on - strand at 254.077 kb on - strand at 254.077 kb on - strand at 254.077 kb on - strand at 254.077 kb on - strand at 254.145 kb on + strand at 254.145 kb on + strand at 254.145 kb on + strand at 254.145 kb on + strand at 254.145 kb on + strand at 254.145 kb on + strand at 254.145 kb on + strand at 254.145 kb on + strand at 254.145 kb on + strand at 254.145 kb on + strand at 254.145 kb on + strand at 254.146 kb on - strand at 254.146 kb on - strand at 254.146 kb on - strand at 254.146 kb on - strand at 254.146 kb on - strand at 254.158 kb on + strand at 254.218 kb on + strand at 254.219 kb on - strand at 254.219 kb on - strand at 254.229 kb on - strand at 254.229 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 251,436 + -1.5 251,444 + -0.8 251,445 - -0.2 251,445 - -2.7 251,511 + -0.8 251,512 - -0.7 251,637 + GFF3428 0.19 +1.6 251,676 + GFF3428 0.24 -1.6 251,685 + GFF3428 0.25 -0.9 251,685 + GFF3428 0.25 +2.9 251,685 + GFF3428 0.25 -0.5 251,685 + GFF3428 0.25 -0.2 251,685 + GFF3428 0.25 +0.2 251,685 + GFF3428 0.25 -1.2 251,685 + GFF3428 0.25 -2.7 251,685 + GFF3428 0.25 +1.0 251,685 + GFF3428 0.25 -2.6 251,686 - GFF3428 0.25 -1.5 251,686 - GFF3428 0.25 -1.8 251,686 - GFF3428 0.25 +0.4 252,060 + GFF3428 0.71 +0.3 252,294 + -1.0 252,305 + +0.9 252,305 + +1.1 252,731 + GFF3429 0.45 -2.3 252,731 + GFF3429 0.45 -1.9 252,732 - GFF3429 0.45 +2.3 252,740 + GFF3429 0.46 -0.6 252,741 - GFF3429 0.46 -2.7 253,058 + GFF3429 0.81 -1.0 253,058 + GFF3429 0.81 +1.2 253,109 + GFF3429 0.86 -0.4 253,109 + GFF3429 0.86 +1.6 253,110 - GFF3429 0.87 +0.6 253,110 - GFF3429 0.87 +0.1 253,326 + +0.3 253,326 + -0.0 253,326 + -0.2 253,326 + -0.9 253,327 - +0.0 253,327 - +2.6 253,327 - -0.4 253,329 + -0.1 253,329 + -0.6 253,329 + -0.4 253,329 + -0.9 253,329 + +0.0 253,329 + -0.9 253,329 + -1.6 253,329 + -0.3 253,330 - +0.6 253,330 - -1.6 253,330 - -0.4 253,330 - +1.6 253,330 - -0.4 253,470 + GFF3430 0.25 -0.2 253,470 + GFF3430 0.25 -1.4 253,471 - GFF3430 0.25 +0.0 253,704 + GFF3430 0.51 +0.6 253,704 + GFF3430 0.51 -0.4 253,705 - GFF3430 0.51 -1.4 253,705 - GFF3430 0.51 -0.7 253,938 + GFF3430 0.77 +0.8 253,938 + GFF3430 0.77 +1.0 253,938 + GFF3430 0.77 -0.2 253,938 + GFF3430 0.77 -0.9 253,938 + GFF3430 0.77 +0.1 254,076 + -0.4 254,076 + -2.1 254,076 + -1.4 254,076 + -0.7 254,076 + -0.5 254,077 - -1.9 254,077 - -3.6 254,077 - -0.5 254,077 - +0.3 254,077 - -2.4 254,145 + +0.0 254,145 + +0.6 254,145 + +1.5 254,145 + +0.6 254,145 + -2.0 254,145 + -2.7 254,145 + +0.5 254,145 + +0.3 254,145 + +3.5 254,145 + -0.2 254,145 + +0.5 254,146 - -0.0 254,146 - +0.9 254,146 - -0.8 254,146 - -1.1 254,146 - -0.8 254,158 + +1.4 254,218 + -2.8 254,219 - -1.7 254,219 - +0.3 254,229 - +1.0 254,229 - -3.0
Or see this region's nucleotide sequence