Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3396 and GFF3397 are separated by 150 nucleotides GFF3397 and GFF3398 overlap by 4 nucleotides GFF3398 and GFF3399 are separated by 142 nucleotides
GFF3396 - Benzoate ABC transporter, permease protein 1, at 218,658 to 219,530
GFF3396
GFF3397 - Benzoate ABC transporter, substrate-binding protein, at 219,681 to 220,853
GFF3397
GFF3398 - benzoate degradation ring-cleavage hydrolase, at 220,850 to 221,659
GFF3398
GFF3399 - Benzoate--CoA ligase (EC 6.2.1.25), at 221,802 to 223,349
GFF3399
Position (kb) 219
220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 218.719 kb on + strand at 218.719 kb on + strand at 218.719 kb on + strand at 218.719 kb on + strand at 218.720 kb on - strand at 218.953 kb on + strand, within GFF3396 at 218.953 kb on + strand, within GFF3396 at 219.052 kb on + strand, within GFF3396 at 219.052 kb on + strand, within GFF3396 at 219.053 kb on - strand, within GFF3396 at 219.109 kb on + strand, within GFF3396 at 219.109 kb on + strand, within GFF3396 at 219.110 kb on - strand, within GFF3396 at 219.226 kb on + strand, within GFF3396 at 219.227 kb on - strand, within GFF3396 at 219.263 kb on - strand, within GFF3396 at 219.268 kb on + strand, within GFF3396 at 219.268 kb on + strand, within GFF3396 at 219.268 kb on + strand, within GFF3396 at 219.269 kb on - strand, within GFF3396 at 219.269 kb on - strand, within GFF3396 at 219.295 kb on + strand, within GFF3396 at 219.382 kb on + strand, within GFF3396 at 219.382 kb on + strand, within GFF3396 at 219.382 kb on + strand, within GFF3396 at 219.383 kb on - strand, within GFF3396 at 219.383 kb on - strand, within GFF3396 at 219.383 kb on - strand, within GFF3396 at 219.397 kb on + strand, within GFF3396 at 219.397 kb on + strand, within GFF3396 at 219.397 kb on + strand, within GFF3396 at 219.398 kb on - strand, within GFF3396 at 219.682 kb on + strand at 219.682 kb on + strand at 219.682 kb on + strand at 219.683 kb on - strand at 219.683 kb on - strand at 219.683 kb on - strand at 219.769 kb on + strand at 219.769 kb on + strand at 219.906 kb on + strand, within GFF3397 at 219.906 kb on + strand, within GFF3397 at 219.906 kb on + strand, within GFF3397 at 219.907 kb on - strand, within GFF3397 at 219.907 kb on - strand, within GFF3397 at 219.925 kb on + strand, within GFF3397 at 219.940 kb on + strand, within GFF3397 at 219.940 kb on + strand, within GFF3397 at 219.973 kb on + strand, within GFF3397 at 220.022 kb on - strand, within GFF3397 at 220.180 kb on + strand, within GFF3397 at 220.180 kb on + strand, within GFF3397 at 220.181 kb on - strand, within GFF3397 at 220.330 kb on + strand, within GFF3397 at 220.396 kb on + strand, within GFF3397 at 220.642 kb on + strand, within GFF3397 at 220.642 kb on + strand, within GFF3397 at 220.643 kb on - strand, within GFF3397 at 220.687 kb on + strand, within GFF3397 at 220.729 kb on + strand, within GFF3397 at 220.729 kb on + strand, within GFF3397 at 220.729 kb on + strand, within GFF3397 at 220.730 kb on - strand, within GFF3397 at 220.730 kb on - strand, within GFF3397 at 220.730 kb on - strand, within GFF3397 at 221.014 kb on - strand, within GFF3398 at 221.188 kb on - strand, within GFF3398 at 221.292 kb on + strand, within GFF3398 at 221.292 kb on + strand, within GFF3398 at 221.292 kb on + strand, within GFF3398 at 221.292 kb on + strand, within GFF3398 at 221.293 kb on - strand, within GFF3398
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 218,719 + -3.5 218,719 + -1.2 218,719 + +0.9 218,719 + -0.7 218,720 - +2.8 218,953 + GFF3396 0.34 -0.7 218,953 + GFF3396 0.34 -1.1 219,052 + GFF3396 0.45 +0.2 219,052 + GFF3396 0.45 +1.1 219,053 - GFF3396 0.45 +0.1 219,109 + GFF3396 0.52 +1.4 219,109 + GFF3396 0.52 -2.4 219,110 - GFF3396 0.52 -0.8 219,226 + GFF3396 0.65 -1.7 219,227 - GFF3396 0.65 -0.6 219,263 - GFF3396 0.69 -0.2 219,268 + GFF3396 0.70 +0.4 219,268 + GFF3396 0.70 -0.7 219,268 + GFF3396 0.70 +0.1 219,269 - GFF3396 0.70 +0.5 219,269 - GFF3396 0.70 -1.2 219,295 + GFF3396 0.73 -0.9 219,382 + GFF3396 0.83 -0.3 219,382 + GFF3396 0.83 +1.7 219,382 + GFF3396 0.83 -1.2 219,383 - GFF3396 0.83 -0.7 219,383 - GFF3396 0.83 +1.0 219,383 - GFF3396 0.83 +1.5 219,397 + GFF3396 0.85 -1.0 219,397 + GFF3396 0.85 +0.7 219,397 + GFF3396 0.85 +2.3 219,398 - GFF3396 0.85 -0.4 219,682 + -0.3 219,682 + +1.4 219,682 + +0.2 219,683 - -1.5 219,683 - -1.5 219,683 - -0.8 219,769 + +0.7 219,769 + -1.6 219,906 + GFF3397 0.19 +0.7 219,906 + GFF3397 0.19 +0.0 219,906 + GFF3397 0.19 -1.8 219,907 - GFF3397 0.19 -0.7 219,907 - GFF3397 0.19 -0.3 219,925 + GFF3397 0.21 -0.7 219,940 + GFF3397 0.22 -1.7 219,940 + GFF3397 0.22 -1.3 219,973 + GFF3397 0.25 -0.2 220,022 - GFF3397 0.29 -1.5 220,180 + GFF3397 0.43 -3.3 220,180 + GFF3397 0.43 +0.2 220,181 - GFF3397 0.43 -0.5 220,330 + GFF3397 0.55 -1.4 220,396 + GFF3397 0.61 -2.6 220,642 + GFF3397 0.82 -1.3 220,642 + GFF3397 0.82 +0.0 220,643 - GFF3397 0.82 +0.1 220,687 + GFF3397 0.86 +0.0 220,729 + GFF3397 0.89 +1.0 220,729 + GFF3397 0.89 -1.3 220,729 + GFF3397 0.89 -0.2 220,730 - GFF3397 0.89 -0.6 220,730 - GFF3397 0.89 +1.6 220,730 - GFF3397 0.89 +1.1 221,014 - GFF3398 0.20 +1.0 221,188 - GFF3398 0.42 -0.3 221,292 + GFF3398 0.55 -3.2 221,292 + GFF3398 0.55 +0.2 221,292 + GFF3398 0.55 -0.0 221,292 + GFF3398 0.55 -1.1 221,293 - GFF3398 0.55 +0.5
Or see this region's nucleotide sequence