Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3371 and GFF3372 overlap by 4 nucleotides GFF3372 and GFF3373 are separated by 66 nucleotides GFF3373 and GFF3374 are separated by 21 nucleotides GFF3374 and GFF3375 overlap by 4 nucleotides
GFF3371 - FIG00456413: hypothetical protein, at 191,037 to 192,425
GFF3371
GFF3372 - hypothetical protein, at 192,422 to 192,874
GFF3372
GFF3373 - Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34), at 192,941 to 194,230
GFF3373
GFF3374 - no description, at 194,252 to 194,371
GFF3374
GFF3375 - DNA-binding transcriptional regulator, MocR family / aminotransferase domain, at 194,368 to 195,756
GFF3375
Position (kb) 192
193
194
195 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 192.462 kb on + strand at 192.480 kb on + strand, within GFF3372 at 192.480 kb on + strand, within GFF3372 at 192.480 kb on + strand, within GFF3372 at 192.480 kb on + strand, within GFF3372 at 192.481 kb on - strand, within GFF3372 at 192.481 kb on - strand, within GFF3372 at 192.481 kb on - strand, within GFF3372 at 192.481 kb on - strand, within GFF3372 at 192.693 kb on + strand, within GFF3372 at 192.693 kb on + strand, within GFF3372 at 192.694 kb on - strand, within GFF3372 at 192.827 kb on + strand, within GFF3372 at 192.827 kb on + strand, within GFF3372 at 192.827 kb on + strand, within GFF3372 at 192.828 kb on - strand, within GFF3372 at 192.942 kb on + strand at 192.942 kb on + strand at 192.943 kb on - strand at 192.943 kb on - strand at 192.943 kb on - strand at 193.329 kb on + strand, within GFF3373 at 193.330 kb on - strand, within GFF3373 at 193.330 kb on - strand, within GFF3373 at 193.350 kb on + strand, within GFF3373 at 193.350 kb on + strand, within GFF3373 at 193.476 kb on + strand, within GFF3373 at 193.476 kb on + strand, within GFF3373 at 193.477 kb on - strand, within GFF3373 at 193.858 kb on - strand, within GFF3373 at 194.007 kb on + strand, within GFF3373 at 194.007 kb on + strand, within GFF3373 at 194.008 kb on - strand, within GFF3373 at 194.274 kb on + strand, within GFF3374 at 194.274 kb on + strand, within GFF3374 at 194.275 kb on - strand, within GFF3374 at 194.275 kb on - strand, within GFF3374 at 194.483 kb on - strand at 194.740 kb on + strand, within GFF3375 at 194.740 kb on + strand, within GFF3375 at 194.741 kb on - strand, within GFF3375 at 194.741 kb on - strand, within GFF3375 at 194.741 kb on - strand, within GFF3375 at 195.175 kb on + strand, within GFF3375 at 195.176 kb on - strand, within GFF3375 at 195.176 kb on - strand, within GFF3375
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 192,462 + -2.1 192,480 + GFF3372 0.13 -1.8 192,480 + GFF3372 0.13 +0.1 192,480 + GFF3372 0.13 -0.6 192,480 + GFF3372 0.13 -1.1 192,481 - GFF3372 0.13 +1.9 192,481 - GFF3372 0.13 -0.1 192,481 - GFF3372 0.13 +1.2 192,481 - GFF3372 0.13 +1.3 192,693 + GFF3372 0.60 +0.8 192,693 + GFF3372 0.60 +0.4 192,694 - GFF3372 0.60 +2.2 192,827 + GFF3372 0.89 +1.0 192,827 + GFF3372 0.89 -0.6 192,827 + GFF3372 0.89 -4.5 192,828 - GFF3372 0.90 -0.9 192,942 + -1.9 192,942 + -1.7 192,943 - +2.2 192,943 - -0.5 192,943 - +1.0 193,329 + GFF3373 0.30 -1.4 193,330 - GFF3373 0.30 -0.7 193,330 - GFF3373 0.30 -2.6 193,350 + GFF3373 0.32 +2.2 193,350 + GFF3373 0.32 +0.0 193,476 + GFF3373 0.41 -1.1 193,476 + GFF3373 0.41 -0.8 193,477 - GFF3373 0.42 -1.8 193,858 - GFF3373 0.71 +0.3 194,007 + GFF3373 0.83 +1.8 194,007 + GFF3373 0.83 -2.3 194,008 - GFF3373 0.83 +2.6 194,274 + GFF3374 0.18 +0.2 194,274 + GFF3374 0.18 -1.4 194,275 - GFF3374 0.19 -0.3 194,275 - GFF3374 0.19 +1.0 194,483 - -1.7 194,740 + GFF3375 0.27 -1.2 194,740 + GFF3375 0.27 -1.8 194,741 - GFF3375 0.27 -0.3 194,741 - GFF3375 0.27 +1.8 194,741 - GFF3375 0.27 -2.0 195,175 + GFF3375 0.58 -0.0 195,176 - GFF3375 0.58 -2.0 195,176 - GFF3375 0.58 +0.8
Or see this region's nucleotide sequence