Strain Fitness in Variovorax sp. SCN45 around GFF3337

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3336 and GFF3337 are separated by 38 nucleotidesGFF3337 and GFF3338 are separated by 139 nucleotidesGFF3338 and GFF3339 are separated by 15 nucleotides GFF3336 - tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmG, at 159,998 to 161,947 GFF3336 GFF3337 - 16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170), at 161,986 to 162,585 GFF3337 GFF3338 - Threonine efflux protein, at 162,725 to 163,339 GFF3338 GFF3339 - Chromosome (plasmid) partitioning protein ParA, at 163,355 to 164,275 GFF3339 Position (kb) 161 162 163Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 161.054 kb on + strand, within GFF3336at 161.241 kb on - strand, within GFF3336at 161.291 kb on + strand, within GFF3336at 161.700 kb on + strand, within GFF3336at 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.955 kb on + strandat 161.956 kb on - strandat 161.956 kb on - strandat 161.956 kb on - strandat 161.956 kb on - strandat 161.961 kb on + strandat 161.961 kb on + strandat 161.961 kb on + strandat 161.962 kb on - strandat 161.962 kb on - strandat 161.962 kb on - strandat 161.962 kb on - strandat 161.962 kb on - strandat 162.031 kb on + strandat 162.031 kb on + strandat 162.031 kb on + strandat 162.032 kb on - strandat 162.032 kb on - strandat 162.064 kb on + strand, within GFF3337at 162.064 kb on + strand, within GFF3337at 162.064 kb on + strand, within GFF3337at 162.064 kb on + strand, within GFF3337at 162.064 kb on + strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.065 kb on - strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.358 kb on + strand, within GFF3337at 162.359 kb on + strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.359 kb on - strand, within GFF3337at 162.459 kb on + strand, within GFF3337at 162.459 kb on + strand, within GFF3337at 162.459 kb on + strand, within GFF3337at 162.459 kb on + strand, within GFF3337at 162.460 kb on - strand, within GFF3337at 162.460 kb on - strand, within GFF3337at 162.460 kb on - strand, within GFF3337at 162.611 kb on - strandat 162.668 kb on + strandat 162.669 kb on - strandat 162.669 kb on - strandat 162.669 kb on - strandat 162.743 kb on + strandat 162.743 kb on + strandat 162.744 kb on - strandat 162.744 kb on - strandat 162.930 kb on - strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.971 kb on + strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 162.972 kb on - strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.103 kb on + strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.104 kb on - strand, within GFF3338at 163.202 kb on + strand, within GFF3338at 163.203 kb on - strand, within GFF3338

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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161,054 + GFF3336 0.54 +1.0
161,241 - GFF3336 0.64 +1.0
161,291 + GFF3336 0.66 +0.6
161,700 + GFF3336 0.87 +0.6
161,955 + +1.0
161,955 + -1.0
161,955 + -1.2
161,955 + -1.5
161,955 + -3.2
161,955 + -0.9
161,955 + +1.2
161,955 + -1.2
161,955 + -3.0
161,955 + +2.2
161,955 + +1.3
161,956 - +0.8
161,956 - +2.6
161,956 - -2.4
161,956 - +0.9
161,961 + -1.4
161,961 + -0.3
161,961 + +0.7
161,962 - +1.0
161,962 - -3.2
161,962 - -0.2
161,962 - +2.5
161,962 - +0.4
162,031 + -1.6
162,031 + +0.3
162,031 + -2.3
162,032 - +0.3
162,032 - -0.4
162,064 + GFF3337 0.13 +0.2
162,064 + GFF3337 0.13 -0.4
162,064 + GFF3337 0.13 -1.8
162,064 + GFF3337 0.13 +0.0
162,064 + GFF3337 0.13 -1.5
162,065 - GFF3337 0.13 -0.9
162,065 - GFF3337 0.13 -0.9
162,065 - GFF3337 0.13 -0.4
162,065 - GFF3337 0.13 +1.6
162,065 - GFF3337 0.13 -0.6
162,065 - GFF3337 0.13 -0.4
162,065 - GFF3337 0.13 +1.0
162,358 + GFF3337 0.62 +3.6
162,358 + GFF3337 0.62 +0.0
162,358 + GFF3337 0.62 -0.3
162,358 + GFF3337 0.62 -3.1
162,358 + GFF3337 0.62 -0.9
162,358 + GFF3337 0.62 +0.4
162,358 + GFF3337 0.62 +0.7
162,358 + GFF3337 0.62 +0.3
162,358 + GFF3337 0.62 +2.0
162,358 + GFF3337 0.62 -0.2
162,358 + GFF3337 0.62 -1.1
162,358 + GFF3337 0.62 -0.0
162,358 + GFF3337 0.62 -0.2
162,358 + GFF3337 0.62 -0.5
162,358 + GFF3337 0.62 -0.0
162,358 + GFF3337 0.62 +2.4
162,358 + GFF3337 0.62 -1.2
162,358 + GFF3337 0.62 -0.6
162,358 + GFF3337 0.62 +0.1
162,358 + GFF3337 0.62 +0.8
162,358 + GFF3337 0.62 +2.3
162,358 + GFF3337 0.62 -1.4
162,358 + GFF3337 0.62 -0.2
162,358 + GFF3337 0.62 -0.9
162,358 + GFF3337 0.62 -0.3
162,358 + GFF3337 0.62 -1.3
162,358 + GFF3337 0.62 +1.6
162,358 + GFF3337 0.62 +1.9
162,358 + GFF3337 0.62 -1.1
162,358 + GFF3337 0.62 -0.3
162,358 + GFF3337 0.62 -1.1
162,359 + GFF3337 0.62 -0.4
162,359 - GFF3337 0.62 -0.7
162,359 - GFF3337 0.62 -0.1
162,359 - GFF3337 0.62 +0.3
162,359 - GFF3337 0.62 -1.7
162,359 - GFF3337 0.62 -1.7
162,359 - GFF3337 0.62 -1.6
162,359 - GFF3337 0.62 -2.8
162,359 - GFF3337 0.62 +0.3
162,359 - GFF3337 0.62 +0.5
162,359 - GFF3337 0.62 -1.6
162,359 - GFF3337 0.62 -2.4
162,359 - GFF3337 0.62 +0.4
162,359 - GFF3337 0.62 +1.9
162,359 - GFF3337 0.62 -0.2
162,359 - GFF3337 0.62 -0.7
162,359 - GFF3337 0.62 -1.7
162,359 - GFF3337 0.62 +1.1
162,359 - GFF3337 0.62 +0.0
162,359 - GFF3337 0.62 +1.2
162,359 - GFF3337 0.62 -0.7
162,359 - GFF3337 0.62 -0.1
162,359 - GFF3337 0.62 -0.6
162,359 - GFF3337 0.62 -0.6
162,359 - GFF3337 0.62 -2.7
162,359 - GFF3337 0.62 -0.3
162,359 - GFF3337 0.62 -2.8
162,359 - GFF3337 0.62 -2.2
162,459 + GFF3337 0.79 -3.1
162,459 + GFF3337 0.79 -0.4
162,459 + GFF3337 0.79 -1.7
162,459 + GFF3337 0.79 -0.7
162,460 - GFF3337 0.79 -1.9
162,460 - GFF3337 0.79 -0.9
162,460 - GFF3337 0.79 -1.8
162,611 - -0.1
162,668 + +1.6
162,669 - +2.6
162,669 - -1.0
162,669 - -0.4
162,743 + -2.8
162,743 + +1.6
162,744 - -1.3
162,744 - +0.5
162,930 - GFF3338 0.33 -1.5
162,971 + GFF3338 0.40 +1.5
162,971 + GFF3338 0.40 -3.4
162,971 + GFF3338 0.40 -0.6
162,971 + GFF3338 0.40 +0.1
162,971 + GFF3338 0.40 +0.3
162,971 + GFF3338 0.40 -0.3
162,971 + GFF3338 0.40 +0.2
162,971 + GFF3338 0.40 -0.7
162,971 + GFF3338 0.40 +1.1
162,971 + GFF3338 0.40 -0.5
162,971 + GFF3338 0.40 -0.9
162,971 + GFF3338 0.40 +1.5
162,971 + GFF3338 0.40 -0.9
162,971 + GFF3338 0.40 -0.4
162,971 + GFF3338 0.40 +0.1
162,971 + GFF3338 0.40 -0.7
162,972 - GFF3338 0.40 +0.6
162,972 - GFF3338 0.40 +0.4
162,972 - GFF3338 0.40 -1.1
162,972 - GFF3338 0.40 +1.6
162,972 - GFF3338 0.40 +0.8
162,972 - GFF3338 0.40 -1.9
162,972 - GFF3338 0.40 +0.0
162,972 - GFF3338 0.40 -0.9
162,972 - GFF3338 0.40 -0.6
162,972 - GFF3338 0.40 -1.6
162,972 - GFF3338 0.40 +1.3
163,103 + GFF3338 0.61 -0.1
163,103 + GFF3338 0.61 +1.0
163,103 + GFF3338 0.61 +0.8
163,103 + GFF3338 0.61 -2.0
163,103 + GFF3338 0.61 -0.6
163,103 + GFF3338 0.61 +1.0
163,103 + GFF3338 0.61 +0.6
163,103 + GFF3338 0.61 -1.7
163,103 + GFF3338 0.61 -0.9
163,103 + GFF3338 0.61 -1.2
163,103 + GFF3338 0.61 +0.3
163,103 + GFF3338 0.61 -1.8
163,103 + GFF3338 0.61 +0.0
163,103 + GFF3338 0.61 +2.6
163,103 + GFF3338 0.61 -1.0
163,103 + GFF3338 0.61 +2.2
163,104 - GFF3338 0.62 -1.4
163,104 - GFF3338 0.62 -1.6
163,104 - GFF3338 0.62 +1.9
163,104 - GFF3338 0.62 -0.5
163,104 - GFF3338 0.62 -1.1
163,104 - GFF3338 0.62 +1.4
163,104 - GFF3338 0.62 -1.2
163,104 - GFF3338 0.62 +0.3
163,104 - GFF3338 0.62 -1.2
163,104 - GFF3338 0.62 -0.3
163,104 - GFF3338 0.62 +0.6
163,104 - GFF3338 0.62 -0.4
163,104 - GFF3338 0.62 +1.6
163,104 - GFF3338 0.62 +0.2
163,104 - GFF3338 0.62 -0.4
163,104 - GFF3338 0.62 +0.8
163,104 - GFF3338 0.62 -2.1
163,104 - GFF3338 0.62 +0.1
163,104 - GFF3338 0.62 -1.9
163,104 - GFF3338 0.62 -0.1
163,104 - GFF3338 0.62 -0.6
163,104 - GFF3338 0.62 -0.4
163,104 - GFF3338 0.62 -1.5
163,104 - GFF3338 0.62 -2.4
163,104 - GFF3338 0.62 -0.4
163,104 - GFF3338 0.62 -1.0
163,104 - GFF3338 0.62 -1.2
163,104 - GFF3338 0.62 -0.4
163,104 - GFF3338 0.62 -0.4
163,202 + GFF3338 0.78 +2.0
163,203 - GFF3338 0.78 -1.3

Or see this region's nucleotide sequence