Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3169 and GFF3170 overlap by 4 nucleotides GFF3170 and GFF3171 are separated by 10 nucleotides GFF3171 and GFF3172 are separated by 202 nucleotides GFF3172 and GFF3173 are separated by 32 nucleotides
GFF3169 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 609,234 to 610,754
GFF3169
GFF3170 - hypothetical protein, at 610,751 to 611,548
GFF3170
GFF3171 - Uncharacterized protein conserved in bacteria, at 611,559 to 612,785
GFF3171
GFF3172 - Glycosidases, at 612,988 to 613,320
GFF3172
GFF3173 - Transcriptional regulator, IclR family, at 613,353 to 614,159
GFF3173
Position (kb) 611
612
613 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 610.561 kb on - strand, within GFF3169 at 610.656 kb on + strand at 610.802 kb on + strand at 610.803 kb on - strand at 610.803 kb on - strand at 610.804 kb on + strand at 610.805 kb on - strand at 611.561 kb on - strand at 611.603 kb on - strand at 611.811 kb on + strand, within GFF3171 at 611.812 kb on - strand, within GFF3171 at 611.860 kb on + strand, within GFF3171 at 611.992 kb on + strand, within GFF3171 at 611.992 kb on + strand, within GFF3171 at 612.038 kb on - strand, within GFF3171 at 612.038 kb on - strand, within GFF3171 at 612.038 kb on - strand, within GFF3171 at 612.079 kb on + strand, within GFF3171 at 612.169 kb on + strand, within GFF3171 at 612.170 kb on - strand, within GFF3171 at 612.394 kb on + strand, within GFF3171 at 612.394 kb on + strand, within GFF3171 at 612.394 kb on + strand, within GFF3171 at 612.395 kb on - strand, within GFF3171 at 612.395 kb on - strand, within GFF3171 at 612.544 kb on + strand, within GFF3171 at 612.544 kb on + strand, within GFF3171 at 612.568 kb on + strand, within GFF3171 at 612.569 kb on - strand, within GFF3171 at 612.569 kb on - strand, within GFF3171 at 612.569 kb on - strand, within GFF3171 at 612.658 kb on + strand, within GFF3171 at 612.658 kb on + strand, within GFF3171 at 612.659 kb on - strand, within GFF3171 at 612.715 kb on + strand at 612.715 kb on + strand at 612.755 kb on - strand at 612.755 kb on - strand at 612.755 kb on - strand at 612.755 kb on - strand at 612.987 kb on + strand at 612.987 kb on + strand at 612.987 kb on + strand at 612.987 kb on + strand at 612.987 kb on + strand at 612.987 kb on + strand at 612.988 kb on - strand at 612.988 kb on - strand at 612.988 kb on - strand at 612.988 kb on - strand at 612.988 kb on - strand at 612.988 kb on - strand at 612.988 kb on - strand at 613.318 kb on + strand at 613.318 kb on + strand at 613.318 kb on + strand at 613.318 kb on + strand at 613.318 kb on + strand at 613.318 kb on + strand at 613.319 kb on - strand at 613.319 kb on - strand at 613.319 kb on - strand at 613.319 kb on - strand at 613.541 kb on - strand, within GFF3173 at 613.765 kb on + strand, within GFF3173 at 613.765 kb on + strand, within GFF3173 at 613.765 kb on + strand, within GFF3173 at 613.766 kb on - strand, within GFF3173
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 610,561 - GFF3169 0.87 +0.0 610,656 + +1.4 610,802 + -2.5 610,803 - +0.4 610,803 - -0.2 610,804 + -0.7 610,805 - +1.7 611,561 - +0.7 611,603 - +2.0 611,811 + GFF3171 0.21 +0.1 611,812 - GFF3171 0.21 -0.9 611,860 + GFF3171 0.25 +1.3 611,992 + GFF3171 0.35 -1.5 611,992 + GFF3171 0.35 -1.0 612,038 - GFF3171 0.39 +0.0 612,038 - GFF3171 0.39 -0.3 612,038 - GFF3171 0.39 -2.2 612,079 + GFF3171 0.42 +0.1 612,169 + GFF3171 0.50 -0.0 612,170 - GFF3171 0.50 -1.2 612,394 + GFF3171 0.68 -1.1 612,394 + GFF3171 0.68 -1.1 612,394 + GFF3171 0.68 -1.9 612,395 - GFF3171 0.68 -2.2 612,395 - GFF3171 0.68 -2.0 612,544 + GFF3171 0.80 -0.5 612,544 + GFF3171 0.80 -1.0 612,568 + GFF3171 0.82 -1.6 612,569 - GFF3171 0.82 -0.4 612,569 - GFF3171 0.82 -1.6 612,569 - GFF3171 0.82 -0.8 612,658 + GFF3171 0.90 -2.8 612,658 + GFF3171 0.90 -3.8 612,659 - GFF3171 0.90 -0.9 612,715 + +1.2 612,715 + +0.5 612,755 - -1.7 612,755 - -0.5 612,755 - +0.5 612,755 - -0.7 612,987 + -1.3 612,987 + -0.6 612,987 + -0.8 612,987 + -0.4 612,987 + -2.3 612,987 + +1.4 612,988 - -2.6 612,988 - -0.2 612,988 - +0.1 612,988 - -0.7 612,988 - +0.9 612,988 - -1.5 612,988 - +0.1 613,318 + +0.3 613,318 + -1.2 613,318 + -1.0 613,318 + +0.3 613,318 + -1.1 613,318 + -0.5 613,319 - -0.4 613,319 - -1.6 613,319 - +0.4 613,319 - -0.3 613,541 - GFF3173 0.23 -1.0 613,765 + GFF3173 0.51 -0.7 613,765 + GFF3173 0.51 -2.8 613,765 + GFF3173 0.51 +0.9 613,766 - GFF3173 0.51 -2.4
Or see this region's nucleotide sequence