Strain Fitness in Variovorax sp. SCN45 around GFF3162

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
599,525	-		GFF3161	0.36	-1.0
600,314	+				+0.5
600,315	-				+0.6
600,315	-				-2.7
600,323	+				-1.9
600,323	+				-1.0
600,323	+				-1.7
600,566	+		GFF3162	0.14	+2.6
600,699	-		GFF3162	0.21	-0.7
600,818	+		GFF3162	0.28	-1.6
600,818	+		GFF3162	0.28	-1.0
600,818	+		GFF3162	0.28	-1.5
600,818	+		GFF3162	0.28	-2.0
600,819	-		GFF3162	0.28	-1.5
600,819	-		GFF3162	0.28	+0.1
600,920	+		GFF3162	0.34	-0.7
600,920	+		GFF3162	0.34	+1.3
600,921	-		GFF3162	0.34	-3.3
601,329	-		GFF3162	0.56	-1.1
601,589	+		GFF3162	0.70	-2.4
601,595	+		GFF3162	0.71	-0.1
601,608	+		GFF3162	0.71	+0.5
601,665	-		GFF3162	0.74	-0.9
601,703	+		GFF3162	0.77	-0.7
601,703	+		GFF3162	0.77	-2.0
601,703	+		GFF3162	0.77	-1.6
601,817	+		GFF3162	0.83	+0.1
601,904	+		GFF3162	0.88	-0.7
601,905	-		GFF3162	0.88	-0.2
601,979	+				-0.0
602,216	+				-1.2
602,217	-				-1.3
602,218	+				-0.2
602,218	+				-0.7
602,218	+				-0.2
602,218	+				+0.1
602,218	+				+0.5
602,218	+				-0.1
602,219	-				-1.8
602,219	-				-0.7
602,219	-				-2.2
602,219	-				-3.4
602,219	-				-2.8
602,219	-				+1.4
602,219	-				-2.3
602,219	-				-0.6
602,291	+				-2.0
602,526	+		GFF3163	0.28	-1.0
602,676	+		GFF3163	0.46	-1.3
602,676	+		GFF3163	0.46	-0.1
602,716	-		GFF3163	0.51	-1.9
602,832	+		GFF3163	0.65	-1.6
602,833	-		GFF3163	0.65	-1.7
602,833	-		GFF3163	0.65	-0.3