Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3156 and GFF3157 are separated by 62 nucleotides GFF3157 and GFF3158 are separated by 4 nucleotides GFF3158 and GFF3159 are separated by 110 nucleotides
GFF3156 - FIG00441737: hypothetical protein, at 592,124 to 593,281
GFF3156
GFF3157 - Sulfite dehydrogenase (quinone), membrane-anchor subunit SoeC (EC 1.8.5.6), at 593,344 to 594,276
GFF3157
GFF3158 - Sulfite dehydrogenase (quinone), iron-sulfur subunit SoeB (EC 1.8.5.6), at 594,281 to 595,009
GFF3158
GFF3159 - Sulfite dehydrogenase (quinone), molybdopterin-containing subunit SoeA (EC 1.8.5.6), at 595,120 to 598,065
GFF3159
Position (kb) 594
595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 593.345 kb on + strand at 593.346 kb on - strand at 593.360 kb on + strand at 593.360 kb on + strand at 593.360 kb on + strand at 593.361 kb on - strand at 593.361 kb on - strand at 593.363 kb on + strand at 593.363 kb on + strand at 593.364 kb on - strand at 593.885 kb on + strand, within GFF3157 at 593.885 kb on + strand, within GFF3157 at 593.903 kb on + strand, within GFF3157 at 593.924 kb on + strand, within GFF3157 at 593.924 kb on + strand, within GFF3157 at 593.924 kb on + strand, within GFF3157 at 594.325 kb on - strand at 594.325 kb on - strand at 594.499 kb on - strand, within GFF3158 at 594.612 kb on + strand, within GFF3158 at 594.753 kb on + strand, within GFF3158 at 594.798 kb on + strand, within GFF3158 at 594.956 kb on - strand at 595.145 kb on + strand at 595.212 kb on - strand at 595.212 kb on - strand at 595.470 kb on - strand, within GFF3159 at 595.470 kb on - strand, within GFF3159 at 595.571 kb on + strand, within GFF3159 at 595.571 kb on + strand, within GFF3159 at 595.572 kb on - strand, within GFF3159 at 595.572 kb on - strand, within GFF3159 at 595.625 kb on + strand, within GFF3159 at 595.625 kb on + strand, within GFF3159 at 595.626 kb on - strand, within GFF3159 at 595.626 kb on - strand, within GFF3159 at 595.727 kb on + strand, within GFF3159 at 595.728 kb on - strand, within GFF3159 at 595.821 kb on - strand, within GFF3159 at 595.884 kb on - strand, within GFF3159 at 595.907 kb on + strand, within GFF3159 at 595.907 kb on + strand, within GFF3159 at 595.907 kb on + strand, within GFF3159 at 595.908 kb on - strand, within GFF3159 at 595.908 kb on - strand, within GFF3159 at 595.931 kb on + strand, within GFF3159 at 595.932 kb on - strand, within GFF3159 at 595.958 kb on + strand, within GFF3159 at 595.958 kb on + strand, within GFF3159 at 595.958 kb on + strand, within GFF3159
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 593,345 + -1.5 593,346 - -1.3 593,360 + +0.0 593,360 + -1.0 593,360 + -1.3 593,361 - -0.3 593,361 - -2.5 593,363 + +1.9 593,363 + -1.8 593,364 - -1.0 593,885 + GFF3157 0.58 +0.5 593,885 + GFF3157 0.58 +0.3 593,903 + GFF3157 0.60 +1.0 593,924 + GFF3157 0.62 -0.9 593,924 + GFF3157 0.62 +1.4 593,924 + GFF3157 0.62 -0.7 594,325 - +1.7 594,325 - -1.5 594,499 - GFF3158 0.30 +2.3 594,612 + GFF3158 0.45 +0.3 594,753 + GFF3158 0.65 +0.7 594,798 + GFF3158 0.71 -0.1 594,956 - -0.5 595,145 + -0.6 595,212 - +0.2 595,212 - -1.8 595,470 - GFF3159 0.12 -2.0 595,470 - GFF3159 0.12 -1.2 595,571 + GFF3159 0.15 -2.3 595,571 + GFF3159 0.15 +1.1 595,572 - GFF3159 0.15 -2.5 595,572 - GFF3159 0.15 +1.3 595,625 + GFF3159 0.17 -2.6 595,625 + GFF3159 0.17 -1.6 595,626 - GFF3159 0.17 -0.2 595,626 - GFF3159 0.17 -2.9 595,727 + GFF3159 0.21 -1.8 595,728 - GFF3159 0.21 -2.4 595,821 - GFF3159 0.24 -3.0 595,884 - GFF3159 0.26 -1.5 595,907 + GFF3159 0.27 -0.2 595,907 + GFF3159 0.27 -0.9 595,907 + GFF3159 0.27 +0.6 595,908 - GFF3159 0.27 -0.2 595,908 - GFF3159 0.27 -3.5 595,931 + GFF3159 0.28 -2.0 595,932 - GFF3159 0.28 +0.3 595,958 + GFF3159 0.28 -3.0 595,958 + GFF3159 0.28 -2.9 595,958 + GFF3159 0.28 -0.4
Or see this region's nucleotide sequence